BS24043.complete Sequence
573 bp assembled on 2011-01-28
GenBank Submission: KX804689
> BS24043.complete
GAAGTTATCAGTCGACATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAG
GATTCTGCTTCATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTG
AAGACGCCCAAGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGC
GACGCCCAAGCCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCAC
GCGGTGGTATGCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTAC
AACAACCAGTGGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTA
CGGCGGATATGGTGCCGGTGGTTATGGCGACTACTATGCCGGCGGCTACT
ATAATGGATATGACTACGGTTATGACGGCTACGGTTACGGCGGCGGCTTT
GAGGGTAACGGCTACGGCGGAGGCGGTGGTGGCAATATGGGCGGCGGTCG
CGGTGGACCCCGCGGCGGCGGCGGCCCCAAAGGCGGTGGCGGTTTTAACG
GTGGCAAGCAGCGCGGAGGCGGTGGACGCCAGCAGCGGCATCAGCCCTAC
TAAAAGCTTTCTAGACCATTCGT
BS24043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-RB | 1035 | CG16901-PB | 499..1035 | 17..553 | 2685 | 100 | Plus |
| sqd-RD | 537 | CG16901-PD | 1..537 | 17..553 | 2685 | 100 | Plus |
| sqd-RC | 927 | CG16901-PC | 499..860 | 17..378 | 1795 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-RB | 2115 | CG16901-RB | 884..1422 | 17..555 | 2695 | 100 | Plus |
| sqd-RD | 1983 | CG16901-RD | 1096..1634 | 17..555 | 2695 | 100 | Plus |
| sqd-RC | 2239 | CG16901-RC | 609..970 | 17..378 | 1795 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13642511..13642740 | 246..17 | 1150 | 100 | Minus |
| 3R | 32079331 | 3R | 13642299..13642428 | 374..245 | 650 | 100 | Minus |
| 3R | 32079331 | 3R | 13636970..13637079 | 483..374 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 13636453..13636527 | 555..481 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:09:46 has no hits.
BS24043.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:39 Download gff for
BS24043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RD | 1069..1603 | 17..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:45 Download gff for
BS24043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RD | 1096..1630 | 17..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:35 Download gff for
BS24043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RD | 1096..1630 | 17..551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:35 Download gff for
BS24043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13636971..13637078 | 375..482 | 100 | <- | Minus |
| 3R | 13642299..13642427 | 246..374 | 100 | <- | Minus |
| 3R | 13636457..13636525 | 483..551 | 100 | <- | Minus |
| 3R | 13642512..13642740 | 17..245 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:45 Download gff for
BS24043.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9462179..9462247 | 483..551 | 100 | <- | Minus |
| arm_3R | 9462693..9462800 | 375..482 | 100 | <- | Minus |
| arm_3R | 9468021..9468149 | 246..374 | 100 | <- | Minus |
| arm_3R | 9468234..9468462 | 17..245 | 100 | | Minus |
BS24043.pep Sequence
Translation from 16 to 552
> BS24043.pep
MPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKPE
NQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYGGYGA
GGYGDYYAGGYYNGYDYGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRG
GGGPKGGGGFNGGKQRGGGGRQQRHQPY*
BS24043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-PD | 178 | CG16901-PD | 1..178 | 1..178 | 1026 | 100 | Plus |
| sqd-PB | 344 | CG16901-PB | 167..344 | 1..178 | 1026 | 100 | Plus |
| sqd-PC | 308 | CG16901-PC | 167..308 | 1..178 | 743 | 79.2 | Plus |
| sqd-PE | 308 | CG16901-PE | 167..308 | 1..178 | 743 | 79.2 | Plus |
| sqd-PA | 321 | CG16901-PA | 167..299 | 1..133 | 682 | 91.7 | Plus |
