BS24045.complete Sequence
3329 bp assembled on 2011-02-18
GenBank Submission: KX804054
> BS24045.complete
GAAGTTATCAGTCGACATGGCTGGCATTTGCCCCCGGGAGGCGGTTCGGG
TGAAAGTGAAGAAATGCGAACCCACTGCTCGGCCGGAGTGGCGAAAGTTT
TCAGTGGACCCGCAGATCACCACGCTGGAGGTGTTGTACTCCCTGCTGGC
CAAGGCCTTCGATGTCAAGTCGGACTTCTCCATTAAGTACAAGGCCTTTG
ATCCGGCGGGCAACGAGATCTACCTGGCCGTGCGCTCCGACTGGGATCTG
GATGCCGCCTTTCTGAGGATTCACAACATTTCCATTCAGACGGCCTCAGA
ACCCTGCCTCACCCTGCAGATCGATGTGAAGCCATTTACGGTGGTCAGGG
AGTGTGAGACCGAGGCCTCCCCGGGTAGATCCATAACGGGAGCGCCTGCT
CCCGCAACTCCTGCACCTTTTGTACCCGCCCGCGAGCTTATGTCACCACT
GCAGTCCTTAGGAGTCTCCCAGAAATATGTCCAGCACATGCAGACCAAAC
TGGGCAGCTCCATTCTGAATCAGATGGAGAAAACCTTCTCCATAGTGCAG
AAAGCGTTTAACTTATCCGAGGAGCATATGGCCAATCTACCGCCACGGCC
GCCCATGTGCGACAGCGAGTTCCGGCTCTTTCTGGACGCACTTGGTCAGA
TTCAACGCAAGGACGAGTTGCATAGGGTCATCTTCCTAGGAGGCATTGAC
CCCAGTCTGCGGCGCGTTGTGTGGAAACATCTGCTTAACGTTTATCCCGG
TGGCGCTAACGGACTGGCACTTGATGGACACCAGCGTATGGAATTCATGC
GACGAAAGTCTGAGCAGTACTGTCGTCTGAGAGACACATGGAAAGCGGCC
GTGAAGCGAGGCAGTGTGGCTGGAGAACTGGCTTACGTAACGAGCATGGT
AAAGAAGGATGTTCTCCGCACGGACCGCCTGCATCCATTTTATGCAGGCA
GCGACGACAATCAGAACATCGCTGCGCTTTTCAATATCCTCACCACATAT
GCACTAAACCATCCATCGGTCTCATATTGTCAAGGCATGTCGGACATTGC
TTCCCCGCTACTGGTTACCATGAACGACGAGGCACAGGCCTACATCTGCT
TTTGTGCGATAATGTCACGTATGCGTGGAAACTTCATGCTGGATGGGATT
GCAATGACTCAGAAATTTGCTCACCTAACGGAGGCGCTAAGTTTTTATGA
TCCTGAGTTCTGGGAGTACCTCAAGTCGCAGCAAGCGGACGACTTACTTT
TCTGTTACCGTTGGCTACTGCTGGAGCTAAAGCGGGAGTTTCCTTTTGAG
GATGCCCTTCGCATGCTGGAGGTGCAGTGGAGTTCACTTCGTTATCGATG
TGATGGGGAGAAAGAGCTGGCGCTCTTTGAAAAGGAATTCGTACCCATTA
CTGATGCCTCCGTGCCCAATAGCGCCAGCACTTTTTCCAGCTCCTACAGC
GCTACGCCGACCAGTCCTTCCTATCTGCTGACAAAACCGCGTGAAAGTCC
CTACACCAAGGTATGCGCTTTGCGCCGTCAGAGCTCTTCAGCCTCCTTGA
GCTCACTAAGTTCTTCGGTGGGAACCAGTCACGGATTGGACAATACAAAA
CGGCTGAATCACAGCCTAGACGACAATATGTCGCGTCATGCGACAGCCGC
TGCTCGCCGCCAAAGACGGACTTCGGCCAAGGTCCATCAAAGTCTGGACG
AGTCAAAAATGCTGGCGCTTATTGAGGGCGCTTTGGATAATAGGAATGTC
AAGTTGGAACAAAACTTGTCCGCCGGCGAGGAAACCGAAGATGATGATGT
ATTTGATAGGAAGGAGTCGCCAAGCTTTTTGGAGACAAATCCGTTTAAGG
ATGATGCTCAGAGAGCACCAGAAAGAGAAACCACACCTCCTGTTTCACCA
GGACGAGCCTTTCTGTGTAGTTCGTCTTCCTCGAATCTGGACGAGGACCC
CAGTGACAGGAAGGCCAAGCTGCAGCACAAAAACATTATGACCGTGAGCA
ATATCATCGCCAAACAGCTAGCTACTAATGCTAGTCAAGTGAGTGAAAGT
ATGAAGCGAGTAAGCACTTCTAGTGGTGGCCATTTTAAGGATCTCAAGGA
AAAGCTGGCGGCAAGCAGTCGTATTGGTATCTCTTTTGATGGAGAAGGAG
AAGATGATGGTGATCGGAAGATGCCGCCAAAGCTTGTAAAAAACTTCAAT
GAATTCCTAAATTTTGCAACTATTAATAAGAATCGTATATCCGATCGTTT
TGCCACTCAGCCGCAACAAACATCCGGTCCAATTTCGGTTACTAAGCCCG
TGGTACAGCTAACCAAGAGTGGGATGGGTAGCTCCCTGGACGAATCTGAT
TCTTCCTCACTTCCGGAAACCAGTTGGAGCGCTTCAACGGCTGCGACGAC
CATTCAGCAGGCACAGGAACTGAGCAGTTACAATCTACAGCTAGATTTGG
AAAGCAATCACCCATGCGACCCCGACGATTCAAACACACCGGATCAAGAT
CCCGACCAGGAGTACTACCCCATGACGACGGCCATAACGCGTGAGCTGCG
CCTAGAGGCCGAGAATCTAGATCGACAAGTTTTTGGGCTGCCTTTTACGG
AGAGCGAGAAACGGGAAGACATCGAGTACGAGAAGCTGGACAAGGACGCC
CTGGACTTAGTGGAGGATCTCAAGGAGAACGAGATCATAACCTGTCCCGA
TGTCAGTGAGCTACATATGCGTCGTCGACAGCGACTGGCGGCTAAGAGTA
ACAGCGTTCAGCAAAACGAGTCGCATGCCTTTAATCCATTCATCGACGAA
AGCCAACTTATGGATGGGCACAGTCCATTGGGAATGCGCAACAGCAACAG
TTTGCCCGAAGTCATCCTGCCCATTTCCACTGAGCCGAGTCTAGTGGAGG
TTTCGCCTTTGGTGGAGATCGCCACGAATGCAGATGACGAGAGCGCCTAT
ACGCGATCCCCCCAGCGTTCAACCCATCTTAATGGAGTCAGTGCAGTGAA
TACCACTGCGGCCGCATTGCCTCCACCTACAGAATTCGGTGGAGGTAATG
CATTCCTCATGTTTCTCTGTCTAACACTTTTGCTACAGCACCGAAACACG
ATCATGAAGGCAGGCATGGACTACAACGAGATTGCCATGCACTTTGATAA
AATGGTGAGGAAACACGACGTCACTCGGGTTCTCAATCAGGCCAGGCGTA
TGTTCGTGGACTACCTTAAGGCACAAAGCAGCCCACAGCGCCAGAGATCG
CCCAGCGGGACTGTCTCCACTGGTTCCACGGGCGCGAGCTTGACTTCATC
AATGCCTGCTTAAAAGCTTTCTAGACCAT
BS24045.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8155-RA | 3297 | CG8155-PA | 1..3297 | 17..3313 | 16485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8155-RA | 4211 | CG8155-RA | 150..3448 | 15..3313 | 16495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15318580..15320510 | 3313..1383 | 9655 | 100 | Minus |
| 2R | 25286936 | 2R | 15320565..15321890 | 1385..60 | 6630 | 100 | Minus |
| 2R | 25286936 | 2R | 15321976..15322022 | 61..15 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:37:24 has no hits.
BS24045.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:37 Download gff for
BS24045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8155-RA | 150..3444 | 17..3311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:21 Download gff for
BS24045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8155-RA | 152..3446 | 17..3311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:42 Download gff for
BS24045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8155-RA | 152..3446 | 17..3311 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:42 Download gff for
BS24045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15318582..15320508 | 1385..3311 | 100 | <- | Minus |
| 2R | 15320566..15321888 | 62..1384 | 100 | <- | Minus |
| 2R | 15321976..15322020 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:21 Download gff for
BS24045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11206087..11208013 | 1385..3311 | 100 | <- | Minus |
| arm_2R | 11208071..11209393 | 62..1384 | 100 | <- | Minus |
| arm_2R | 11209481..11209525 | 17..61 | 100 | | Minus |
BS24045.pep Sequence
Translation from 16 to 3312
> BS24045.pep
MAGICPREAVRVKVKKCEPTARPEWRKFSVDPQITTLEVLYSLLAKAFDV
KSDFSIKYKAFDPAGNEIYLAVRSDWDLDAAFLRIHNISIQTASEPCLTL
QIDVKPFTVVRECETEASPGRSITGAPAPATPAPFVPARELMSPLQSLGV
SQKYVQHMQTKLGSSILNQMEKTFSIVQKAFNLSEEHMANLPPRPPMCDS
EFRLFLDALGQIQRKDELHRVIFLGGIDPSLRRVVWKHLLNVYPGGANGL
ALDGHQRMEFMRRKSEQYCRLRDTWKAAVKRGSVAGELAYVTSMVKKDVL
RTDRLHPFYAGSDDNQNIAALFNILTTYALNHPSVSYCQGMSDIASPLLV
TMNDEAQAYICFCAIMSRMRGNFMLDGIAMTQKFAHLTEALSFYDPEFWE
YLKSQQADDLLFCYRWLLLELKREFPFEDALRMLEVQWSSLRYRCDGEKE
LALFEKEFVPITDASVPNSASTFSSSYSATPTSPSYLLTKPRESPYTKVC
ALRRQSSSASLSSLSSSVGTSHGLDNTKRLNHSLDDNMSRHATAAARRQR
RTSAKVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDDVFDRKE
SPSFLETNPFKDDAQRAPERETTPPVSPGRAFLCSSSSSNLDEDPSDRKA
KLQHKNIMTVSNIIAKQLATNASQVSESMKRVSTSSGGHFKDLKEKLAAS
SRIGISFDGEGEDDGDRKMPPKLVKNFNEFLNFATINKNRISDRFATQPQ
QTSGPISVTKPVVQLTKSGMGSSLDESDSSSLPETSWSASTAATTIQQAQ
ELSSYNLQLDLESNHPCDPDDSNTPDQDPDQEYYPMTTAITRELRLEAEN
LDRQVFGLPFTESEKREDIEYEKLDKDALDLVEDLKENEIITCPDVSELH
MRRRQRLAAKSNSVQQNESHAFNPFIDESQLMDGHSPLGMRNSNSLPEVI
LPISTEPSLVEVSPLVEIATNADDESAYTRSPQRSTHLNGVSAVNTTAAA
LPPPTEFGGGNAFLMFLCLTLLLQHRNTIMKAGMDYNEIAMHFDKMVRKH
DVTRVLNQARRMFVDYLKAQSSPQRQRSPSGTVSTGSTGASLTSSMPA*
BS24045.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8155-PA | 1098 | CG8155-PA | 1..1098 | 1..1098 | 5647 | 100 | Plus |
| Tbc1d15-17-PC | 715 | CG11490-PC | 325..582 | 185..441 | 361 | 33.5 | Plus |
| Tbc1d15-17-PB | 715 | CG11490-PB | 325..582 | 185..441 | 361 | 33.5 | Plus |
| Tbc1d15-17-PA | 715 | CG11490-PA | 325..582 | 185..441 | 361 | 33.5 | Plus |
| CG5337-PA | 702 | CG5337-PA | 316..597 | 154..440 | 315 | 29.2 | Plus |
