BS24049.complete Sequence
1505 bp assembled on 2011-02-03
GenBank Submission: KX801842
> BS24049.complete
GAAGTTATCAGTCGACATGGACAAGGTGAACGAACTCAAGGAAAAGGGTA
ACCAGGCGCTCAGTGCCGAGAAGTTCGACGAGGCGGTGGCGGCGTACACA
GAGGCCATCGCTCTGGACGACCAGAACCATGTGCTCTACAGCAACCGTTC
GGCGGCATTCGCCAAGGCTGGAAAGTTCCAGGAGGCGCTAGAAGATGCGG
AGAAGACCATTCAGCTTAATCCCACCTGGCCTAAGGGTTACTCACGCAAA
GGAGCTGCCGCTGCGGGTCTGAATGACTTTATGAAGGCCTTCGAAGCGTA
CAACGAGGGTCTCAAGTACGATCCCACGAATGCTATACTCCTGCAAGGCC
GCATGGAAACTACTGCCTCGGCTCTGAGCTTTATGCAATCGCAGGGGGAT
ATACCCATGGACGTTGATCCCCAGCAGGCACGCAGCCGCAGGGCTCCATC
GCCACCGCCGGCGAAACCGGCTGAGCCCCCAAAGCCCGCTGAACCTCGGG
TAGAGGACATGACTGAGGAGCAGAAGAATAAGTACTTCGCGAGGAAGGAG
AAGGAACTGGGCAACGCCGCCTACAAGAAAAAGGACTTTGAAACGGCCCT
AAAACACTACCACGCTGCCATTGAACACGATCCCACGGATATCACGTTCT
ATAACAACATAGCTGCTGTTCACTTTGAGCGCAAGGAGTACGAGGAGTGC
ATCAAGCAGTGCGAGAAGGGCATTGAGGTGGGGCGCGAAAGCCGCGCCGA
CTTTAAGCTGATAGCTAAGTCCTTTGCTCGCATCGGTAACACCTATCGTA
AGCTAGAGAACTACAAGCAGGCGAAGGTTTACTATGAGAAGGCCATGTCC
GAGCATCGCACCCCTGAGATCAAGACCTCGCTGAGCGAGGTGGAAGCCAA
AATCAAGGAGGAGGAGCGAATGGCCTACATCAATCCGGAGAAGGCCGAGG
AAGAGAAGGAGCAGGGCAACCTTTTCTTTAAGAAGGGGGACTACAGCACC
GCTGTAAAGCACTACACCGAGGCCATCAAGCGCAATCCGGATGATCCCAA
ACTCTATAGTAACCGCGCCGCCTGCTACACCAAGCTGGCCGCCTTTGATC
TGGGCCTCAAGGACTGCGACACTTGCATCAAGCTAGACGAAAAGTTCATA
AAGGGCTACATCCGCAAGGGCAAAATTCTACAGGGCATGCAGCAACAATC
TAAGGCGCAAGCCGCTTACCAAAAGGCCCTGGAACTGGACCCCAACAACG
CGGAGGCCATTGAAGGCTACCGTCAGTGTTCGATGAACTTCCAGCGCAAT
CCGCAGGAGGTCCTCAAAAACGCAATGTCCGACCCGGAGATTCAACAGAT
CTTAAAGGATCCGGCTATGCGTATGATCCTCGAGCAGATGCAAAGCGATC
CCAATGCGGTCAAAGAACACTTGCAGAATCCTGCCATCGCCGATAAGATA
ATGAAACTGCTGGAGTCGGGCATCATTCAGATTCACTAGAAGCTTTCTAG
ACCAT
BS24049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hop-RA | 1473 | CG2720-PA | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hop-RA | 2023 | CG2720-RA | 151..1623 | 17..1489 | 7365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 295703..296811 | 308..1416 | 5545 | 100 | Plus |
| 2L | 23513712 | 2L | 295344..295630 | 24..310 | 1435 | 100 | Plus |
| 2L | 23513712 | 2L | 296977..297049 | 1417..1489 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:05:32 has no hits.
BS24049.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:32 Download gff for
BS24049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hop-RA | 164..1636 | 17..1489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:42 Download gff for
BS24049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hop-RA | 151..1623 | 17..1489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:17 Download gff for
BS24049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hop-RA | 151..1623 | 17..1489 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:17 Download gff for
BS24049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 295339..295628 | 17..308 | 98 | -> | Plus |
| 2L | 295704..296811 | 309..1416 | 100 | -> | Plus |
| 2L | 296977..297049 | 1417..1489 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:42 Download gff for
BS24049.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 295339..295628 | 17..308 | 98 | -> | Plus |
| arm_2L | 295704..296811 | 309..1416 | 100 | -> | Plus |
| arm_2L | 296977..297049 | 1417..1489 | 100 | | Plus |
BS24049.pep Sequence
Translation from 16 to 1488
> BS24049.pep
MDKVNELKEKGNQALSAEKFDEAVAAYTEAIALDDQNHVLYSNRSAAFAK
AGKFQEALEDAEKTIQLNPTWPKGYSRKGAAAAGLNDFMKAFEAYNEGLK
YDPTNAILLQGRMETTASALSFMQSQGDIPMDVDPQQARSRRAPSPPPAK
PAEPPKPAEPRVEDMTEEQKNKYFARKEKELGNAAYKKKDFETALKHYHA
AIEHDPTDITFYNNIAAVHFERKEYEECIKQCEKGIEVGRESRADFKLIA
KSFARIGNTYRKLENYKQAKVYYEKAMSEHRTPEIKTSLSEVEAKIKEEE
RMAYINPEKAEEEKEQGNLFFKKGDYSTAVKHYTEAIKRNPDDPKLYSNR
AACYTKLAAFDLGLKDCDTCIKLDEKFIKGYIRKGKILQGMQQQSKAQAA
YQKALELDPNNAEAIEGYRQCSMNFQRNPQEVLKNAMSDPEIQQILKDPA
MRMILEQMQSDPNAVKEHLQNPAIADKIMKLLESGIIQIH*
BS24049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hop-PA | 490 | CG2720-PA | 1..490 | 1..490 | 2538 | 100 | Plus |
| CG43163-PC | 2523 | CG43163-PC | 67..177 | 6..116 | 222 | 42.3 | Plus |
| CG43163-PD | 2523 | CG43163-PD | 67..177 | 6..116 | 222 | 42.3 | Plus |
| Sgt-PB | 331 | CG5094-PB | 109..287 | 306..485 | 212 | 29 | Plus |
| Sgt-PA | 331 | CG5094-PA | 109..287 | 306..485 | 212 | 29 | Plus |
| Sgt-PB | 331 | CG5094-PB | 119..219 | 7..107 | 182 | 32.7 | Plus |
| CG43163-PC | 2523 | CG43163-PC | 67..193 | 312..445 | 165 | 31.3 | Plus |
| CG43163-PD | 2523 | CG43163-PD | 67..193 | 312..445 | 165 | 31.3 | Plus |
