BS24086.complete Sequence
1952 bp assembled on 2011-02-15
GenBank Submission: KX801803
> BS24086.complete
GAAGTTATCAGTCGACATGGAACAGCCGAGCATTCTCGTCAAAATCCTGC
ACTCGATTCCGCACGTGAATTACACATTCCGTCGGGTTAACGACACCTTT
AATCCGGACAGTGATGTTTACCTCGAGAGTCTGGTCATCCTGGCATCCAT
TCCCGCTGGTCTGCTGATCGGCTCCCTACTGGGCCTGCTGCTCTACCTGC
TGACCAGATGCTGCGATCGCCGCCAGAGGAAGCCGAGCGCCCAGCGCTGC
CAGAGCTGCTCCTTGGTCATCATTACGCTGATGACCTGCGCCGCCATCGG
ATTAGGCTTGTACGGCAACGATGATTTCCATAATGGGCTTCTGCAGGCCT
TTGGATCCGGGAAGAGCGTCGAGGGTCTGGTGCTCACCCTGAAACGACAG
ACGGAGAGCATCAAGCACGACCTGGAGACGCGAATGGCTGGGCATAAGGT
GGAGCAGCTGGTGGAGAAGCCTCATTATAACCAGACGGTGGTCATGCTGC
TTATTGAGACGTCGCGCTTGGTCACGGAGAACACCTCGCGGGCGGTGGCC
TCGCTGGACAGCATGGTTCACTACTTTATGAAGGCCAAGGGCAGCGAGAA
CGACACCTCGCTAATGGGATTACTGCAGCTCGGTGAGTTCTACGAATCCA
TTCGCTGGCCAGCCACCCTGGCCTTTCTCACTGTGCTCCTGCTGCTCTGT
ACGGTGTTGGTGATCGGCGTGGCGAGGCGATCCCGTTGCACCCTGATCTT
CTTCAGCGTCTCGGGTCTGTTCTGCATCATCATCTGCTGGCTGCTAGCTG
GCGTTTATTTGGCCTCCAGTGTGGCTGCCGGAGATTTCTGTATGCGGCCC
CACGACTATATGTGCCGTCAGGTGGGCATGAGAAGTCCCTATGTTGATTT
TCTAAACTGCGGCACACCGCGCAATCGCTTTATCCTGCGGCTAAACGAAT
CCCGGGACCTGGTGGATCGGGCCAGGGAAAGTGTGGAGCATATGCAGCGC
ATGAGTCAGGAGACATATCCACACATCGACATCCAGCGCACTTTGAACGC
CATGGACAACGATCTAGAGATCACCCTGCGCAACCTGACGACACTGTCGG
CCACATTGGACCGCCGCACGATCGACATGCACTACGAGGAGGCACTGCGC
GGACTTTGCGGCGGCGGGCTACTGGGACTCAGTCTGATGATGGTGGCTGG
TCTGCTGACCTCCTTCCTGCTGACGATCCTCGTGTATGCCGATTCTCACG
CCTGGATCTATCTGACCAAGCGGCCTACGCTGGACGCGGACAAATCGGAG
ACAGCGCCACTATTTCCCGCCTCAAACGCGCCGAGCGCGAGCATCTCGCC
CACAGCTCCGCTCAGCACGGGGACGATCAACAGGACGTTGCTCCACCACC
AGCAGGCGTCGTCGGGCGGCGGTTCGGGTACCTTGCCGGGATCTGGGGGA
GGCGCAGGGGCTGGCGGAGGCGTTGGCGCCAATGGACACAATGGCGTGGG
GCCGTACCGCAACGGATCGGCGGGCCTGAGACAAGGGTTGGCATCACCTT
CATCTCAATCAAGCCACACCTCATCCACCGCTACTTACAACAACGGCACC
ACCAGTTACCACAACAGCCACCAACAACACAACAACCACCTGTACAGCAA
CCACTACAGCCACAGCAACAACCACTACAACAACACACAGCATAGAACTA
ACCCTGCGGCGGGGGCGGTAGCAGCGGCGGTGGGCGTGGTCAGCAGTGGC
CAGCGATCACCGTCGCCGCCGCCTGTCTACGATTTGGTGCATGGCACAAG
GTCAGGACACCACACGCTAGGACGCCTTCCATCGCACCACCAGCAATCGG
CGACGTATTTGCCAGGACCCAACAATGGAAAGTACGCGACGCTCAGCAAG
CAGTGTAAAACGCTCGAGTCCAACGACTTCTACTGAAAGCTTTCTAGACC
AT
BS24086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3638-RL | 3675 | CG3638-PL | 1..1920 | 17..1936 | 9600 | 100 | Plus |
| CG3638-RF | 1920 | CG3638-PF | 1..1920 | 17..1936 | 9600 | 100 | Plus |
| CG3638-RG | 3675 | CG3638-PG | 1..1920 | 17..1936 | 9600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3638-RL | 6097 | CG3638-RL | 667..2586 | 17..1936 | 9600 | 100 | Plus |
| CG3638-RF | 6037 | CG3638-RF | 607..2526 | 17..1936 | 9600 | 100 | Plus |
| CG3638-RG | 6097 | CG3638-RG | 667..2586 | 17..1936 | 9600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1222484..1223013 | 1801..1272 | 2650 | 100 | Minus |
| X | 23542271 | X | 1223087..1223361 | 1273..999 | 1375 | 100 | Minus |
| X | 23542271 | X | 1223623..1223876 | 880..627 | 1270 | 100 | Minus |
| X | 23542271 | X | 1223936..1224166 | 628..398 | 1155 | 100 | Minus |
| X | 23542271 | X | 1226104..1226284 | 306..126 | 905 | 100 | Minus |
| X | 23542271 | X | 1221460..1221597 | 1936..1799 | 690 | 100 | Minus |
| X | 23542271 | X | 1223436..1223555 | 999..880 | 600 | 100 | Minus |
| X | 23542271 | X | 1233803..1233913 | 127..17 | 555 | 100 | Minus |
| X | 23542271 | X | 1225434..1225530 | 400..304 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:55:52 has no hits.
BS24086.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:56 Download gff for
BS24086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3638-RB | 667..2585 | 17..1935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:20 Download gff for
BS24086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3638-RB | 667..2585 | 17..1935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:20 Download gff for
BS24086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3638-RG | 667..2585 | 17..1935 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:20 Download gff for
BS24086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1221461..1221595 | 1801..1935 | 100 | <- | Minus |
| X | 1222485..1223012 | 1273..1800 | 100 | <- | Minus |
| X | 1223088..1223360 | 1000..1272 | 100 | <- | Minus |
| X | 1223436..1223554 | 881..999 | 100 | <- | Minus |
| X | 1223623..1223874 | 629..880 | 100 | <- | Minus |
| X | 1223936..1224163 | 401..628 | 100 | <- | Minus |
| X | 1225434..1225528 | 306..400 | 100 | <- | Minus |
| X | 1226105..1226282 | 128..305 | 100 | <- | Minus |
| X | 1233803..1233913 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:20 Download gff for
BS24086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1115494..1115628 | 1801..1935 | 100 | <- | Minus |
| arm_X | 1116518..1117045 | 1273..1800 | 100 | <- | Minus |
| arm_X | 1117121..1117393 | 1000..1272 | 100 | <- | Minus |
| arm_X | 1117469..1117587 | 881..999 | 100 | <- | Minus |
| arm_X | 1117656..1117907 | 629..880 | 100 | <- | Minus |
| arm_X | 1117969..1118196 | 401..628 | 100 | <- | Minus |
| arm_X | 1119467..1119561 | 306..400 | 100 | <- | Minus |
| arm_X | 1120138..1120315 | 128..305 | 100 | <- | Minus |
| arm_X | 1127836..1127946 | 17..127 | 100 | | Minus |
BS24086.pep Sequence
Translation from 16 to 1935
> BS24086.pep
MEQPSILVKILHSIPHVNYTFRRVNDTFNPDSDVYLESLVILASIPAGLL
IGSLLGLLLYLLTRCCDRRQRKPSAQRCQSCSLVIITLMTCAAIGLGLYG
NDDFHNGLLQAFGSGKSVEGLVLTLKRQTESIKHDLETRMAGHKVEQLVE
KPHYNQTVVMLLIETSRLVTENTSRAVASLDSMVHYFMKAKGSENDTSLM
GLLQLGEFYESIRWPATLAFLTVLLLLCTVLVIGVARRSRCTLIFFSVSG
LFCIIICWLLAGVYLASSVAAGDFCMRPHDYMCRQVGMRSPYVDFLNCGT
PRNRFILRLNESRDLVDRARESVEHMQRMSQETYPHIDIQRTLNAMDNDL
EITLRNLTTLSATLDRRTIDMHYEEALRGLCGGGLLGLSLMMVAGLLTSF
LLTILVYADSHAWIYLTKRPTLDADKSETAPLFPASNAPSASISPTAPLS
TGTINRTLLHHQQASSGGGSGTLPGSGGGAGAGGGVGANGHNGVGPYRNG
SAGLRQGLASPSSQSSHTSSTATYNNGTTSYHNSHQQHNNHLYSNHYSHS
NNHYNNTQHRTNPAAGAVAAAVGVVSSGQRSPSPPPVYDLVHGTRSGHHT
LGRLPSHHQQSATYLPGPNNGKYATLSKQCKTLESNDFY*
BS24086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3638-PL | 639 | CG3638-PL | 1..639 | 1..639 | 3335 | 100 | Plus |
| CG3638-PF | 639 | CG3638-PF | 1..639 | 1..639 | 3335 | 100 | Plus |
| CG3638-PG | 1472 | CG3638-PG | 1..639 | 1..639 | 3335 | 100 | Plus |
| CG3638-PB | 639 | CG3638-PB | 1..639 | 1..639 | 3335 | 100 | Plus |
| CG3638-PJ | 655 | CG3638-PJ | 1..655 | 1..639 | 3308 | 97.6 | Plus |
