BS24102.complete Sequence
1568 bp assembled on 2011-02-18
GenBank Submission: KX803951
> BS24102.complete
GAAGTTATCAGTCGACATGTTAAAGATAAATCCGCGAATGCTGATGCAAC
AGTGCCTGCGCCACGCCCACAGCCAGGTGCGCGTCCGCTTCGCCCCAAGT
CCCACGGGTTACCTGCATTTGGGCGGTCTGCGCACAGCCCTGTACAATTT
CCTGTACGCCAGGCATTTGGGCGGAAAATTCCTGTTGCGGATCGAGGACA
CGGATCAAACTCGACTAGTGCCCGGTGCCAGTGAACGACTGGTGGAGGAT
CTGCTCTGGGCAGGCATAGAAATTGACGAGGGACCCGGTTTTGGCGGTCA
ACTGGGACCCTATGTGCAGAGTCAGCGAACGGAAATTTACAGCAAAGCCA
TTGAAGAACTGCTCCATAATGGCACCGCGTACAGATGCTTTTGCACCGAA
CGCCGTCTGGATTTGTTGCGTAAGGAGGCGCTGAGAACCCGGCAAGTTCC
ACGCTATGATAACAAGTGCCGACATCTAACGACTTCGGAAGTGGATTCCC
TACTGGCCAAGGGTACACCCTACTGCATACGATTCAAGCTGACGGATCAC
GAGGAGCCACTGGATGATCTCATCTACGGCAAGGTGCATCACAATGTCAG
CGACAACGAAGGCGATCCAGTGGTCATGAAGAGCGATCAATTTCCCACCT
ATCACTTTGCCAACGTGGTGGACGACCATTTGATGGGCATCACCCACGTC
CTGAGGGGCGTGGAGTGGCAGATATCCACCACCAAGCATTTGCTGCTCTA
CAAAGCTTTTGGCTGGCAGCCCCCTAAATTTGGTCACCTGCCGCTTTTGG
TGAATGCAGATGGCACCAAGCTAAGCAAACGTCAAGGAGACATTGGCATT
CAGCACTTTCGGGAACGCGGCTACTTTCCGCAGGCTTTAGTGAACTATGT
GGTTTCTGCAGGCGGAGGATTCGAGCATCGTACCAATGCCAAGCAGCAGC
TGCTCAGCATGCAGGCGCTCCATGAGCAGTTTCACATAGAGCGCGTCAAC
TCCCATCCGAGTCGCCTTAATCCCGAACTGCTCGATGATCTAAATCGCCT
GGAGATTGTGCAGCGTTTGTCTGGGAATGAGAGTCGTACGAAATTGGTCA
ATGAAGTGCAACAGCTGGTGAAAGAAGCCTATCCGCAACACTCCAACTTA
GATCTAGCCGAGGAGCACATATTGGATGTGCTGAATTGGTCATCAAAGCG
CTTAACACTGCTCCAAGATTTGACCAGCAGCAAACTGAGTTTCCTGTGGG
TGAAACCCAGCGATTTTCAAATTAAAGACCTGACCGCAGAGCAACTAGCT
CACTTGCTGCAGTTAATCAACGCTATCCAGGACTTTCACAAGGATGAACT
CAACGTTAAGCTTAAATCCTTTGCTCAAAAAGAAAACATCAAATTCCCAC
TAATGATGAAAACACTAAGAGCAGCCCTAAGTGGCCTAAAAGAAGGTCCT
GGCGTAGCGGAAATGATGGAGATCCTAGGCAAATCCGTCACTCTCGAACG
ACTCAAAGAAGCTCTGCCCAAGGAAAGTCTGCATTTAGAAGAACATCAGT
GAAAGCTTTCTAGACCAT
BS24102.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4573-RA | 1536 | CG4573-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4573-RA | 1700 | CG4573-RA | 67..1602 | 17..1552 | 7680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16416315..16416728 | 753..340 | 2070 | 100 | Minus |
| 3L | 28110227 | 3L | 16415390..16415801 | 1552..1141 | 2060 | 100 | Minus |
| 3L | 28110227 | 3L | 16415862..16416248 | 1140..754 | 1935 | 100 | Minus |
| 3L | 28110227 | 3L | 16416786..16417111 | 342..17 | 1630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:15:25 has no hits.
BS24102.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:40 Download gff for
BS24102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4573-RA | 60..1589 | 22..1551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:20 Download gff for
BS24102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4573-RA | 72..1601 | 22..1551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:42 Download gff for
BS24102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4573-RA | 72..1601 | 22..1551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:42 Download gff for
BS24102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16415391..16415801 | 1141..1551 | 100 | <- | Minus |
| 3L | 16415862..16416248 | 754..1140 | 100 | <- | Minus |
| 3L | 16416315..16416725 | 343..753 | 100 | <- | Minus |
| 3L | 16416786..16417106 | 22..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:20 Download gff for
BS24102.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16408491..16408901 | 1141..1551 | 100 | <- | Minus |
| arm_3L | 16408962..16409348 | 754..1140 | 100 | <- | Minus |
| arm_3L | 16409415..16409825 | 343..753 | 100 | <- | Minus |
| arm_3L | 16409886..16410206 | 22..342 | 100 | | Minus |
BS24102.pep Sequence
Translation from 16 to 1551
> BS24102.pep
MLKINPRMLMQQCLRHAHSQVRVRFAPSPTGYLHLGGLRTALYNFLYARH
LGGKFLLRIEDTDQTRLVPGASERLVEDLLWAGIEIDEGPGFGGQLGPYV
QSQRTEIYSKAIEELLHNGTAYRCFCTERRLDLLRKEALRTRQVPRYDNK
CRHLTTSEVDSLLAKGTPYCIRFKLTDHEEPLDDLIYGKVHHNVSDNEGD
PVVMKSDQFPTYHFANVVDDHLMGITHVLRGVEWQISTTKHLLLYKAFGW
QPPKFGHLPLLVNADGTKLSKRQGDIGIQHFRERGYFPQALVNYVVSAGG
GFEHRTNAKQQLLSMQALHEQFHIERVNSHPSRLNPELLDDLNRLEIVQR
LSGNESRTKLVNEVQQLVKEAYPQHSNLDLAEEHILDVLNWSSKRLTLLQ
DLTSSKLSFLWVKPSDFQIKDLTAEQLAHLLQLINAIQDFHKDELNVKLK
SFAQKENIKFPLMMKTLRAALSGLKEGPGVAEMMEILGKSVTLERLKEAL
PKESLHLEEHQ*
BS24102.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4573-PA | 511 | CG4573-PA | 1..511 | 1..511 | 2669 | 100 | Plus |
