BS24103.complete Sequence
707 bp assembled on 2011-01-28
GenBank Submission: KX806545
> BS24103.complete
GAAGTTATCAGTCGACATGCAGCCCGACTTTGATTTCACCGACACACCGG
TCAGCACTGGTACCACCATTATGGCAGTGGAGTTCGATGGCGGAGTGGTC
ATTGGAGCCGATTCGCGCACCAGCTCGGGCGCCTATGTTGCCAATCGGGT
CACCGACAAGCTGACCCGCATCACGGACAAAGTGTACTGCTGCCGCAGTG
GCTCGGCCGCCGACACCCAGGCCATTGCCGACATTGTGGCCTACTCGCTG
AACTATCACGAGAATCAGACCAACAAGGATGCTCTGGTGTTCGAGGCCGC
CTCAGAGTTCCGTAATTACTGCTACAGCTACCGCGAGTCCCTGCTTGCCG
GCATCATTGTGGCTGGGTGGGATGAGCAGCGCGGCGGCCAGGTGTACAGC
ATCCCGTTGGGCGGCATGCTGACCCGCGAGTCCTGCACCATCGGCGGATC
GGGATCTAGTTTTATCTACGGATTTGTTAGGGAGCACTACCGCCCCAATA
TGGCGCTGGAGGATTGCGTTACATTCGTCAAGAAGGCTGTCCAGCACGCT
ATCTACCACGATGGCAGCTCCGGTGGTGTGGTGCGCATTGGCATCATCAC
CAAGGATGGCATCGAGCGACGCATCTTCTACAACACAGAATCGGGCGCAT
CGGCTGTTTCCAGCACTCCCAGCTTCATTTCCTCGGAATAAAAGCTTTCT
AGACCAT
BS24103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta1-RA | 675 | CG8392-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta1-RA | 852 | CG8392-RA | 92..767 | 17..692 | 3380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16014114..16014588 | 536..62 | 2375 | 100 | Minus |
| 2R | 25286936 | 2R | 16013890..16014046 | 692..536 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 16014652..16014696 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:36:55 has no hits.
BS24103.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:07 Download gff for
BS24103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta1-RA | 85..757 | 17..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:18 Download gff for
BS24103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta1-RA | 92..764 | 17..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:14 Download gff for
BS24103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta1-RA | 92..764 | 17..689 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:14 Download gff for
BS24103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16014114..16014588 | 62..536 | 100 | <- | Minus |
| 2R | 16014652..16014696 | 17..61 | 100 | | Minus |
| 2R | 16013893..16014045 | 537..689 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:18 Download gff for
BS24103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11901398..11901550 | 537..689 | 100 | <- | Minus |
| arm_2R | 11901619..11902093 | 62..536 | 100 | <- | Minus |
| arm_2R | 11902157..11902201 | 17..61 | 100 | | Minus |
BS24103.pep Sequence
Translation from 16 to 690
> BS24103.pep
MQPDFDFTDTPVSTGTTIMAVEFDGGVVIGADSRTSSGAYVANRVTDKLT
RITDKVYCCRSGSAADTQAIADIVAYSLNYHENQTNKDALVFEAASEFRN
YCYSYRESLLAGIIVAGWDEQRGGQVYSIPLGGMLTRESCTIGGSGSSFI
YGFVREHYRPNMALEDCVTFVKKAVQHAIYHDGSSGGVVRIGIITKDGIE
RRIFYNTESGASAVSSTPSFISSE*
BS24103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta1-PA | 224 | CG8392-PA | 1..224 | 1..224 | 1159 | 100 | Plus |
| Prosbeta2-PA | 272 | CG3329-PA | 34..253 | 10..217 | 260 | 26.7 | Plus |
| Prosbeta2R1-PA | 307 | CG18341-PA | 45..241 | 12..212 | 233 | 27.4 | Plus |
| Prosbeta5-PA | 282 | CG12323-PA | 73..256 | 15..198 | 215 | 28.1 | Plus |
| Prosbeta5-PB | 282 | CG12323-PB | 73..256 | 15..198 | 215 | 28.1 | Plus |
