BS24105.complete Sequence
617 bp assembled on 2011-01-28
GenBank Submission: KX803272
> BS24105.complete
GAAGTTATCAGTCGACATGTCGCTCTTGCAAAAACTAAGCAGATCTGGTG
TACCGATGGCTTCATTAACCTGTCGTTCCCGAATGCCAATGGTCATTCGA
CTTATCAGCGGTAACACAGAAAAACCGGCGGAGGAATCTACTCCCGCAGT
GAATACGGAAACGGCGGAGATTGGCAGCAGCAAGGGAGGATTCGCCCGTG
CCTTCGACAAGTACACGGCACCAGCCACGCCTCCACAGCTGCCGGAAGAC
AACCAGACCTTCGCCTCCCTGCTGCGCAACTCCAAATTAATTGATCTGGA
CAACGCCGAGGGCAAGGTGGTCAGTGGCAAGATCTTTCATGTGGTGGGCG
ATGATCTCTACATAGACTTTGGTTGGAAGTTTCACTGCGTCTGCAGTCGT
CCAACACGCAATGCCAGCGACTATGTGCGAGGAGCCCGTGTTCGACTGCG
CATCAAGGACTTGGAGTTGTCCACCAAGTTTCTGGGTTCGTCCAAGGATA
TTACCATTCTAGAGGCAGATTGCCATTTGCTGGGTCTCCTGTCCACGCCC
ACCCGCCAGTCGACGGCCAAAACAACGCCGAAAATCGAAGATATCCTATA
AAAGCTTTCTAGACCAT
BS24105.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS28-RA | 585 | CG5497-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS28-RA | 691 | CG5497-RA | 75..661 | 16..602 | 2935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18614661..18614944 | 299..16 | 1405 | 99.6 | Minus |
| 2R | 25286936 | 2R | 18614240..18614427 | 602..415 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 18614482..18614603 | 417..296 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:37:32 has no hits.
BS24105.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:07 Download gff for
BS24105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS28-RA | 74..656 | 17..599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:31 Download gff for
BS24105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS28-RA | 76..658 | 17..599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:28 Download gff for
BS24105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS28-RA | 76..658 | 17..599 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:28 Download gff for
BS24105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18614243..18614424 | 418..599 | 100 | <- | Minus |
| 2R | 18614482..18614603 | 296..417 | 100 | <- | Minus |
| 2R | 18614665..18614943 | 17..295 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:31 Download gff for
BS24105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14501748..14501929 | 418..599 | 100 | <- | Minus |
| arm_2R | 14501987..14502108 | 296..417 | 100 | <- | Minus |
| arm_2R | 14502170..14502448 | 17..295 | 100 | | Minus |
BS24105.pep Sequence
Translation from 16 to 600
> BS24105.pep
MSLLQKLSRSGVPMASLTCRSRMPMVIRLISGNTEKPAEESTPAVNTETA
EIGSSKGGFARAFDKYTAPATPPQLPEDNQTFASLLRNSKLIDLDNAEGK
VVSGKIFHVVGDDLYIDFGWKFHCVCSRPTRNASDYVRGARVRLRIKDLE
LSTKFLGSSKDITILEADCHLLGLLSTPTRQSTAKTTPKIEDIL*
BS24105.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS28-PA | 194 | CG5497-PA | 1..194 | 1..194 | 991 | 100 | Plus |
