BS24107.complete Sequence
497 bp assembled on 2011-01-28
GenBank Submission: KX802098
> BS24107.complete
GAAGTTATCAGTCGACATGCTGCCACTTTCACTTTTAAAAACAGCACAGA
GCCATCCCATGTTGGTGGAGCTGAAAAATGGTGAAACATACAATGGTCAC
CTGGTTAGTTGCGACTCGTGGATGAATATTAATCTGCGCGATGTTATTTG
CACCTCAAAGGATGGCGATCGGTTTTGGCGCATGCCCGAATGTTATATCC
GCGGGAGCACCATCAAATATCTGCGAATCCCCGACGAAGTAATCGACATG
GTCAAGGAGGACGCGCAGGCCAAGTCAAGGAATCGCACAGAGATGAACAA
AAACCGCGGCGGCAACTCGTCGCAAAATCAGCGCGGCGGACGTCCTGGTG
GCGGCAACCGCAACAATGTCGGCAATCGTCCCGGCCAGGGATACGGAGGT
GCTGCTAACAACGCGATGCGCCTGGGTGGCGCTGCTGGCCAAGGGAACCG
TCTGCCCCACGCCGCCAAAAATAGGAAATAGAAGCTTTCTAGACCAT
BS24107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17768-RB | 465 | CG17768-PB | 1..465 | 17..481 | 2325 | 100 | Plus |
| CG17768-RA | 465 | CG17768-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LSm-4-RB | 1578 | CG33677-RB | 1075..1539 | 17..481 | 2325 | 100 | Plus |
| CG17768-RB | 530 | CG17768-RB | 27..491 | 17..481 | 2325 | 100 | Plus |
| CG17768-RA | 1578 | CG17768-RA | 1075..1539 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10403236..10403558 | 481..159 | 1615 | 100 | Minus |
| 2L | 23513712 | 2L | 10403729..10403829 | 161..61 | 505 | 100 | Minus |
| 2L | 23513712 | 2L | 10403891..10403933 | 61..19 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:37:59 has no hits.
BS24107.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:08 Download gff for
BS24107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17768-RA | 1047..1505 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:42 Download gff for
BS24107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17768-RA | 1075..1533 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:39 Download gff for
BS24107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17768-RA | 1075..1533 | 17..475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:39 Download gff for
BS24107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10403242..10403556 | 161..475 | 100 | <- | Minus |
| 2L | 10403730..10403828 | 62..160 | 100 | <- | Minus |
| 2L | 10403891..10403934 | 17..61 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:42 Download gff for
BS24107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10403242..10403556 | 161..475 | 100 | <- | Minus |
| arm_2L | 10403730..10403828 | 62..160 | 100 | <- | Minus |
| arm_2L | 10403891..10403934 | 17..61 | 97 | | Minus |
BS24107.pep Sequence
Translation from 16 to 480
> BS24107.pep
MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDG
DRFWRMPECYIRGSTIKYLRIPDEVIDMVKEDAQAKSRNRTEMNKNRGGN
SSQNQRGGRPGGGNRNNVGNRPGQGYGGAANNAMRLGGAAGQGNRLPHAA
KNRK*
BS24107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17768-PB | 154 | CG17768-PB | 1..154 | 1..154 | 828 | 100 | Plus |
| CG17768-PA | 154 | CG17768-PA | 1..154 | 1..154 | 828 | 100 | Plus |
| SmD3-PA | 151 | CG8427-PA | 5..147 | 2..143 | 157 | 29.9 | Plus |
