Clone BS24112 Report

Search the DGRC for BS24112

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:241
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG8320-RA
Protein status:BS24112.pep: full length peptide match
Sequenced Size:557

Clone Sequence Records

BS24112.complete Sequence

557 bp assembled on 2011-01-28

GenBank Submission: KX803638

> BS24112.complete
GAAGTTATCAGTCGACATGGCTCCCCAGCAAAAGGGTAAACAAGGCACGA
AGGGCGCCAAGCAAATCGTGGAGGAAAACAAGACTACACTGACTTTCTAC
CGGAACATGGCCATTGGATGTGCTGCACCTGCTCTGCTCCTCAGTTTCCT
GGTCTTCGAAGTCACCAAAACCTCAGTGTTTATGCACATTCTTTCGTTGC
TGATCCTGGGGAGCTCCTACCAGTTTATGGCGTTCATGTCGCAGGCCAAA
TACTCTGAGAGCGGTGCTCTTTTGGACTCCGGCAACGACTTAAATATGGA
AGGCGGCATCGCGGAAAACGTTAAGGATTTGATCATCCTTACTTCCGGCA
CCCTGCTGCTGGCCCTCATCTCAAACTACTTCTGGTTGGTGCTGCTTTTG
GCGCCCATACGAGCTGGATGGATGCTCTGGGGCTCCGTCATCCAGCCGTG
GCTGTCGCAACGCAACGCCCAGGACGATAATCCCCAGGTGGACGAGAAAA
AGCAAAAAAAGATGGATCGCAGAATGCGTCGCATGAGATAGAAGCTTTCT
AGACCAT

BS24112.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8320-RA 525 CG8320-PA 1..525 17..541 2610 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8320-RA 981 CG8320-RA 161..690 16..545 2635 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15993187..15993416 316..545 1150 100 Plus
2R 25286936 2R 15992778..15992933 23..178 765 99.4 Plus
2R 25286936 2R 15992992..15993129 178..315 690 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:36:24 has no hits.

BS24112.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:06 Download gff for BS24112.complete
Subject Subject Range Query Range Percent Splice Strand
CG8320-RA 160..684 17..541 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:04 Download gff for BS24112.complete
Subject Subject Range Query Range Percent Splice Strand
CG8320-RA 162..686 17..541 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:04 Download gff for BS24112.complete
Subject Subject Range Query Range Percent Splice Strand
CG8320-RA 162..686 17..541 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:04 Download gff for BS24112.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15992776..15992933 17..178 96 -> Plus
2R 15992993..15993129 179..315 100 -> Plus
2R 15993187..15993412 316..541 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:04 Download gff for BS24112.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11880281..11880438 17..178 96 -> Plus
arm_2R 11880498..11880634 179..315 100 -> Plus
arm_2R 11880692..11880917 316..541 100   Plus

BS24112.pep Sequence

Translation from 16 to 540

> BS24112.pep
MAPQQKGKQGTKGAKQIVEENKTTLTFYRNMAIGCAAPALLLSFLVFEVT
KTSVFMHILSLLILGSSYQFMAFMSQAKYSESGALLDSGNDLNMEGGIAE
NVKDLIILTSGTLLLALISNYFWLVLLLAPIRAGWMLWGSVIQPWLSQRN
AQDDNPQVDEKKQKKMDRRMRRMR*

BS24112.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8320-PA 174 CG8320-PA 1..174 1..174 884 100 Plus