Clone BS24113 Report

Search the DGRC for BS24113

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:241
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG10031-RA
Protein status:BS24113.pep: gold
Sequenced Size:422

Clone Sequence Records

BS24113.complete Sequence

422 bp assembled on 2011-01-28

GenBank Submission: KX803776

> BS24113.complete
GAAGTTATCAGTCGACATGCTTCTGCGGATGACCCAGTTTCTCTGCCTTG
CGGCACTCGTTTTGCTAAGTCTTATGCAACTTACGCAGGCAGTAGCCACT
CCCAATAATAATAATAATAATAATAACAATATTAAACCGAAGGCTGTGGT
TCAGGTGCAACCTGGAAATCCATCGGGAAACAAGCCTGCAGTTGCCACAA
CTACAATCAAACCACAGAGACTGGTACCAGATCCCAAATGCCTGCAGCCC
TTGGACGTTGGTCCATGCCGCATGAGCCTAGAAAGGTTCTACTACAACAA
GGATTCAAAAGCTTGCGAGACCTTCAAGTACGGAGGATGTCGAGGCAATG
ACAATCGTTGGGGATTCCGACAAACTTGTGAGGAGGCTTGTATTCCCAAA
AAGTGAAAGCTTTCTAGACCAT

BS24113.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10031-RA 390 CG10031-PA 1..390 17..406 1950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10031-RA 577 CG10031-RA 53..442 17..406 1950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3698827..3699040 230..17 1070 100 Minus
2L 23513712 2L 3698586..3698763 406..229 890 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:38:14 has no hits.

BS24113.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:08 Download gff for BS24113.complete
Subject Subject Range Query Range Percent Splice Strand
CG10031-RA 52..440 17..405 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:05:49 Download gff for BS24113.complete
Subject Subject Range Query Range Percent Splice Strand
CG10031-RA 53..441 17..405 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:44 Download gff for BS24113.complete
Subject Subject Range Query Range Percent Splice Strand
CG10031-RA 53..441 17..405 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:44 Download gff for BS24113.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3698587..3698761 231..405 100 <- Minus
2L 3698827..3699040 17..230 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:05:49 Download gff for BS24113.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3698587..3698761 231..405 100 <- Minus
arm_2L 3698827..3699040 17..230 100   Minus

BS24113.pep Sequence

Translation from 16 to 405

> BS24113.pep
MLLRMTQFLCLAALVLLSLMQLTQAVATPNNNNNNNNNIKPKAVVQVQPG
NPSGNKPAVATTTIKPQRLVPDPKCLQPLDVGPCRMSLERFYYNKDSKAC
ETFKYGGCRGNDNRWGFRQTCEEACIPKK*

BS24113.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG10031-PA 129 CG10031-PA 1..129 1..129 699 100 Plus
CG3604-PB 132 CG3604-PB 36..108 56..128 155 39.7 Plus
CG3604-PA 132 CG3604-PA 36..108 56..128 155 39.7 Plus