BS24115.complete Sequence
689 bp assembled on 2011-01-28
GenBank Submission: KX806052
> BS24115.complete
GAAGTTATCAGTCGACATGGTGGAACCCATTTTCGAGTATCAATTTCGAC
TGATTTTAATCGGCGACAGCACCGTGGGCAAGAGCTCGCTGCTCAAATTC
TTCACAGACGGCAAATTCGCCGAGTTATCCGATCCCACAGTTGGCGTCGA
CTTCTTTGCCCGCCTCATCGAAATGAAGGACGGCACACAGATCAAGCTCC
AGCTGTGGGACACTGCTGGCCAAGAGCGCTTCCGTTCGATCACCAAGTCC
TACTACCGGAACTCGGTTGGCGTGCTGCTGGTCTACGACATATCGAATCA
CGCCAGCTTCGAGCACATACCGCTGTGGATGATGGAGGCACAGCGTCACA
TTGAGCCCCACCGCCCCGTTTTCGCATTGGTCGGCTGCAAACTGGACCTC
ATCAATGCGGGCGGACACCGGGAGGTGACCACAGAGGAGGCACAAAAATT
TGCCAAACAGCACGGTCTGCATTTCGTTGAGACGTCGGCCCGGTCTGGTG
CCAATGTGGAGGAGGCATTTCGCATGGTCACCCAGGAGGTGTACGCCCGC
ATTCGATCCGGCGAATATAAGGCGGAGGATGGATGGGACGGCATCAAGTC
TGGCTTTTCGCGACCCAATAGTCTGGACTTTAATCTCGTCGTAGCAGAGC
CGGAAAAGTCATCATGTTGTTGAAAGCTTTCTAGACCAT
BS24115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab39-RB | 657 | CG12156-PB | 1..657 | 17..673 | 3270 | 99.8 | Plus |
| Rab39-RA | 657 | CG12156-PA | 1..657 | 17..673 | 3270 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab39-RB | 1406 | CG12156-RB | 306..962 | 17..673 | 3270 | 99.8 | Plus |
| Rab39-RA | 1129 | CG12156-RA | 306..962 | 17..673 | 3270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7735762..7736312 | 123..673 | 2740 | 99.8 | Plus |
| X | 23542271 | X | 7735228..7735335 | 17..124 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:39:02 has no hits.
BS24115.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:09 Download gff for
BS24115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab39-RA | 303..958 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:10 Download gff for
BS24115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab39-RA | 306..961 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:05 Download gff for
BS24115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab39-RA | 306..961 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:05 Download gff for
BS24115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7735228..7735335 | 17..124 | 100 | -> | Plus |
| X | 7735764..7736311 | 125..672 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:10 Download gff for
BS24115.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7629797..7630344 | 125..672 | 99 | | Plus |
| arm_X | 7629261..7629368 | 17..124 | 100 | -> | Plus |
BS24115.pep Sequence
Translation from 16 to 672
> BS24115.pep
MVEPIFEYQFRLILIGDSTVGKSSLLKFFTDGKFAELSDPTVGVDFFARL
IEMKDGTQIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDISNHASFEH
IPLWMMEAQRHIEPHRPVFALVGCKLDLINAGGHREVTTEEAQKFAKQHG
LHFVETSARSGANVEEAFRMVTQEVYARIRSGEYKAEDGWDGIKSGFSRP
NSLDFNLVVAEPEKSSCC*
BS24115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab39-PB | 218 | CG12156-PB | 1..218 | 1..218 | 1138 | 100 | Plus |
| Rab39-PA | 218 | CG12156-PA | 1..218 | 1..218 | 1138 | 100 | Plus |
| Rab2-PB | 213 | CG3269-PB | 3..188 | 6..196 | 461 | 50.3 | Plus |
| Rab2-PA | 213 | CG3269-PA | 3..188 | 6..196 | 461 | 50.3 | Plus |
| Rab11-PA | 214 | CG5771-PA | 5..213 | 3..218 | 413 | 42.6 | Plus |
