Clone BS24121 Report

Search the DGRC for BS24121

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:241
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptLSm3-RA
Protein status:BS24121.pep: full length peptide match
Sequenced Size:344

Clone Sequence Records

BS24121.complete Sequence

344 bp assembled on 2011-01-28

GenBank Submission: KX802250

> BS24121.complete
GAAGTTATCAGTCGACATGGCCGACGAAACAGAGCAGCTCAGTCAGGTGA
TTTTGCCGGTAAAGGAGCCTTTGGATCTCATCCGATTGAGTTTAGATGAG
AAGGTGTACGTAAAGATGCGCAACGAGCGGGAACTGCGAGGACGTCTTCA
CGCCTTTGATCAACATTTGAACATGGTGCTCGGCGATGCGGAGGAGACGG
TGACCACTGTGGAGATCGACGAGGAGACCTATGAGGAGGTGTACAAGACC
GCCAAGCGCACTATTCCCATGCTATTCGTTAGAGGCGATGGAGTCATCCT
GGTTTCGCCACCCATGCGGGTGGGCTAGAAGCTTTCTAGACCAT

BS24121.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
LSm3-RB 312 CG31184-PB 1..312 17..328 1545 99.7 Plus
LSm3-RA 312 CG31184-PA 1..312 17..328 1545 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
LSm3-RB 491 CG31184-RB 105..416 17..328 1545 99.7 Plus
LSm3-RA 643 CG31184-RA 257..568 17..328 1545 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23996766..23996942 152..328 870 99.4 Plus
3R 32079331 3R 23996588..23996706 34..152 595 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:39:54 has no hits.

BS24121.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:11 Download gff for BS24121.complete
Subject Subject Range Query Range Percent Splice Strand
LSm3-RA 257..568 17..328 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:37 Download gff for BS24121.complete
Subject Subject Range Query Range Percent Splice Strand
LSm3-RA 257..568 17..328 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:29 Download gff for BS24121.complete
Subject Subject Range Query Range Percent Splice Strand
LSm3-RA 257..568 17..328 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:29 Download gff for BS24121.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23996518..23996538 17..37 100 -> Plus
3R 23996592..23996705 38..151 100 -> Plus
3R 23996766..23996942 152..328 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:37 Download gff for BS24121.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19822240..19822260 17..37 100 -> Plus
arm_3R 19822314..19822427 38..151 100 -> Plus
arm_3R 19822488..19822664 152..328 99   Plus

BS24121.pep Sequence

Translation from 16 to 327

> BS24121.pep
MADETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQH
LNMVLGDAEETVTTVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPM
RVG*

BS24121.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
LSm3-PB 103 CG31184-PB 1..103 1..103 517 100 Plus
LSm3-PA 103 CG31184-PA 1..103 1..103 517 100 Plus