BS24122.complete Sequence
1169 bp assembled on 2011-02-03
GenBank Submission: KX802896
> BS24122.complete
GAAGTTATCAGTCGACATGAATATAAATCTGCCGAATTTCAATGTGAAGA
ACCTGGTGAAGGAGGCGGGCAGCACAATATCACGAGTGGTGCAGCTCACG
GAGGAGAAACTGGGCACCACGGAGCGCACCGAGTACGACTTGCACTTCCA
GAATCTCGCCGAGCGGGCTGATGTGACCAAGACATGGACGGAGAAGATAG
TGCGCGACACAGAGTCGGTGCTGATACCCAATCCTCAGAACCGGGTCGAA
GACTTCATCTTCGAGAAGATTGAAAAGTCGAAGCCAAAAAGGTTGAGCAA
CCTAGAGCACCTGGCTCTGGACATGATCGAGGCTGGGGGCGATTTCGGGC
AGGATTTACCCTATGGTCAGGCTCTGATCAAGGTCGGCCAAGCGGAACAG
AAACTGGGCCAGTGCGAGCACGACTTTATAGCCACCTCGGGCATTTGCTT
TACACAGCCGTTGCGCAAGTTCCTAGACGGCGAAATGAAGACAATTGGCA
AGGAGCGAGGCATCCTGGAGACCAAGCGCCTGGATCTGGACGCCTGCAAG
AACAGGGTGAAGAAAGCGCGCAGCATGCTGGGTCAGCAATCGGCGGAACG
GGACTTGCGGGTGGCTCAGGCCGAGTTCGACCGGCAGGCGGAGATTACCA
AGCTGCTGCTGGACGGGATCAGCACATCGCAGGCATCTCATTTGCGCCAC
TTGCACGCCTTCATCCAGACGCAAGTGCGCTACTACAAGCAGTGCGGCGA
TGTCATGGAGCAGCTGCAGCGTGAACTGGCCAACTTGGGAGGCCCCACGC
CATACATTCCGCTCGACGTGAACGAGGCCAGTGCCAGCAAGTCCAACATA
TCGTCCGGAGCCGCAGCCCGTGGTCCTGGCAACAATCACTCTGCCAATAT
GGCTGCCACCGGCCACAAGCCTAATCAGCCCATGCACGTCAGCACGGATC
AGATGCAGAGGGCACGCGTCCTTTGCTCCTACGACGCCAAGGATCACACC
GAGCTTAATTTGAGCGCCAATGAGGTGATCTTCGTGACGGAGTGCTCACC
AGTAAACGAGGATTACATGTACGGAAAACAGGGTCTATTGAAGGGTCTGG
TGCCACGCGCATTTGTTGAAATGCTCGACGAAGAGCACGATGTCACCCTC
TAAAAGCTTTCTAGACCAT
BS24122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RB | 1137 | CG9834-PB | 1..1137 | 17..1153 | 5685 | 100 | Plus |
| EndoB-RD | 1101 | CG9834-PD | 1..767 | 17..783 | 3835 | 100 | Plus |
| EndoB-RC | 1137 | CG9834-PC | 1..576 | 17..592 | 2880 | 100 | Plus |
| EndoB-RD | 1101 | CG9834-PD | 973..1101 | 1025..1153 | 645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RB | 2190 | CG9834-RB | 114..1250 | 17..1153 | 5685 | 100 | Plus |
| EndoB-RD | 2154 | CG9834-RD | 114..880 | 17..783 | 3835 | 100 | Plus |
| EndoB-RC | 2190 | CG9834-RC | 114..689 | 17..592 | 2880 | 100 | Plus |
| EndoB-RD | 2154 | CG9834-RD | 1086..1214 | 1025..1153 | 645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19309815..19310316 | 593..92 | 2510 | 100 | Minus |
| 2R | 25286936 | 2R | 19308571..19308813 | 1026..784 | 1215 | 100 | Minus |
| 2R | 25286936 | 2R | 19309393..19309584 | 783..592 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 19308387..19308517 | 1153..1023 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 19310475..19310552 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:01:33 has no hits.
BS24122.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:26 Download gff for
BS24122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RB | 141..1275 | 17..1151 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:34 Download gff for
BS24122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RB | 114..1248 | 17..1151 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:37 Download gff for
BS24122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoB-RB | 114..1248 | 17..1151 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:37 Download gff for
BS24122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19308389..19308515 | 1025..1151 | 100 | <- | Minus |
| 2R | 19308573..19308813 | 784..1024 | 100 | <- | Minus |
| 2R | 19309393..19309583 | 593..783 | 100 | <- | Minus |
| 2R | 19309816..19310313 | 95..592 | 100 | <- | Minus |
| 2R | 19310475..19310552 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:34 Download gff for
BS24122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15195894..15196020 | 1025..1151 | 100 | <- | Minus |
| arm_2R | 15196078..15196318 | 784..1024 | 100 | <- | Minus |
| arm_2R | 15196898..15197088 | 593..783 | 100 | <- | Minus |
| arm_2R | 15197321..15197818 | 95..592 | 100 | <- | Minus |
| arm_2R | 15197980..15198057 | 17..94 | 100 | | Minus |
BS24122.pep Sequence
Translation from 16 to 1152
> BS24122.pep
MNINLPNFNVKNLVKEAGSTISRVVQLTEEKLGTTERTEYDLHFQNLAER
ADVTKTWTEKIVRDTESVLIPNPQNRVEDFIFEKIEKSKPKRLSNLEHLA
LDMIEAGGDFGQDLPYGQALIKVGQAEQKLGQCEHDFIATSGICFTQPLR
KFLDGEMKTIGKERGILETKRLDLDACKNRVKKARSMLGQQSAERDLRVA
QAEFDRQAEITKLLLDGISTSQASHLRHLHAFIQTQVRYYKQCGDVMEQL
QRELANLGGPTPYIPLDVNEASASKSNISSGAAARGPGNNHSANMAATGH
KPNQPMHVSTDQMQRARVLCSYDAKDHTELNLSANEVIFVTECSPVNEDY
MYGKQGLLKGLVPRAFVEMLDEEHDVTL*
BS24122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-PB | 378 | CG9834-PB | 1..378 | 1..378 | 1947 | 100 | Plus |
| EndoB-PA | 390 | CG9834-PA | 1..390 | 1..378 | 1924 | 96.9 | Plus |
| EndoB-PD | 366 | CG9834-PD | 1..366 | 1..378 | 1502 | 81.3 | Plus |
| EndoB-PC | 378 | CG9834-PC | 1..378 | 1..378 | 1479 | 78.8 | Plus |
| EndoA-PC | 369 | CG14296-PC | 10..361 | 21..369 | 234 | 23.6 | Plus |
