BS24124.complete Sequence
1565 bp assembled on 2011-02-03
GenBank Submission: KX801250
> BS24124.complete
GAAGTTATCAGTCGACATGGACTTTGATGAGTTCCGTGAATTTGGCCATG
CCTCCATCGAGTTCCTTATCAACTATCTGAGCGGCATACGTGAGAGGGAT
GTCCTGCCCAGCACGGCTCCATATGCGGTGATCAATCAGCTGCCCAAGGA
GATTCCCGAGCAGCCCGATCATTGGCGCGAGGTCCTCAAGGATCTGGAGA
ACATCATCCTGCCGGGTCTGACCCACTGGCAATCGCCCTACTTCAATGCC
TTCTATCCGTCATCCTCGTCGGCGGGCTCCATCATCGGTGAGCTGCTGAT
CGCGGGCATCGGAGTCCTTGGATTCAGTTGGATCTGCAGTCCCGCCTGCA
CAGAACTGGAGGTGGTGGTCATGGACTGGCTGGCCAAGTTCCTGAAGCTG
CCCGCACACTTCCAGCACGCCAGCGATGGACCAGGAGGCGGGGTGATCCA
GGGATCAGCTAGCGAGGCTGTGTTGGTGGCTGTCCTAGCTGCCAGGGAAC
AAGCTGTGGCCAACTACAGGGAATCGCATCCGGAGCTGAGCGAAAGTGAG
GTGCGTGGCCGCTTGGTGGCCTACTCCTCGGACCAGAGTAACAGCTGCAT
TGAGAAGGCTGGAGTCCTGGCTGCCATGCCGATTCGATTGCTGCCGGCTG
GAGAGGATTTCGTACTTAGAGGCGATACACTGAGAGGAGCCATCGAGGAG
GACGTGGCAGCGGGCAGGATTCCGGTGATCTGCGTTGCCACTCTGGGCAC
CACGGGCACTTGTGCCTATGACGACATTGAATCCCTGTCCGCTGTCTGCG
AGGAATTCAAGGTGTGGCTCCATGTTGATGCCGCGTATGCCGGTGGAGCC
TTTGCTCTGGAGGAATGTTCGGATTTGCGAAAGGGATTGGATCGCGTGGA
CTCGCTAAACTTCAACCTGCACAAGTTCATGCTGGTCAACTTCGATTGCT
CGGCCATGTGGCTAAGGGATGCCAACAAGGTGGTCGACAGCTTCAATGTG
GATCGCATCTACCTGAAGCACAAGCACGAGGGTCAGTCGCAAATTCCTGA
CTTCCGTCATTGGCAAATCCCCCTGGGTCGCCGCTTCCGAGCTCTAAAAG
TCTGGATCACATTCCGCACTCTGGGAGCCGAGGGATTGCGAAACCATGTG
CGCAAGCACATCGAGTTGGCCAAACAGTTTGAGCAGCTTGTGCTCAAGGA
TTCGCGATTCGAGCTGGTGGCTCCTCGTGCCCTGGGACTGGTTTGTTTCC
GGCCCAAAGGTGACAATGAGATTACCACCCAGTTGCTGCAACGGCTTATG
GATCGAAAGAAGATCTACATGGTTAAGGCCGAGCATGCGGGTCGTCAGTT
TCTGCGATTCGTCGTATGCGGCATGGACACCAAAGCCTCCGATATTGATT
TCGCCTGGCAGGAGATCGAGTCTCAACTGACGGACCTGCAGGCGGAGCAA
TCCTTGGTGGCCCGCAAATCGGGAAACGTCGGCGATCTTGCGCAGCACTT
CCAGATCCATCTGAGCACCGAAAATGCAACGCACGAGAAATCTCAGTGAA
AGCTTTCTAGACCAT
BS24124.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-RB | 1533 | CG10501-PB | 1..1533 | 17..1549 | 7665 | 100 | Plus |
| amd-RA | 1533 | CG10501-PA | 293..1533 | 309..1549 | 6145 | 99.7 | Plus |
| Ddc-RD | 1428 | CG10697-PD | 910..1002 | 929..1021 | 180 | 79.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-RB | 1749 | CG10501-RB | 117..1650 | 16..1549 | 7670 | 100 | Plus |
| amd-RA | 1792 | CG10501-RA | 453..1693 | 309..1549 | 6145 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19112793..19114011 | 331..1549 | 6095 | 100 | Plus |
| 2L | 23513712 | 2L | 19110410..19110646 | 95..331 | 1185 | 100 | Plus |
| 2L | 23513712 | 2L | 19110270..19110351 | 16..97 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:00:56 has no hits.
BS24124.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:26 Download gff for
BS24124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RB | 113..1644 | 17..1548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:09 Download gff for
BS24124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RB | 118..1649 | 17..1548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:22 Download gff for
BS24124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RB | 118..1649 | 17..1548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:22 Download gff for
BS24124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19110412..19110646 | 97..331 | 100 | -> | Plus |
| 2L | 19110271..19110350 | 17..96 | 100 | -> | Plus |
| 2L | 19112794..19114010 | 332..1548 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:09 Download gff for
BS24124.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19110271..19110350 | 17..96 | 100 | -> | Plus |
| arm_2L | 19110412..19110646 | 97..331 | 100 | -> | Plus |
| arm_2L | 19112794..19114010 | 332..1548 | 100 | | Plus |
BS24124.pep Sequence
Translation from 16 to 1548
> BS24124.pep
MDFDEFREFGHASIEFLINYLSGIRERDVLPSTAPYAVINQLPKEIPEQP
DHWREVLKDLENIILPGLTHWQSPYFNAFYPSSSSAGSIIGELLIAGIGV
LGFSWICSPACTELEVVVMDWLAKFLKLPAHFQHASDGPGGGVIQGSASE
AVLVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGV
LAAMPIRLLPAGEDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCA
YDDIESLSAVCEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFN
LHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYLKHKHEGQSQIPDFRHWQ
IPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFEL
VAPRALGLVCFRPKGDNEITTQLLQRLMDRKKIYMVKAEHAGRQFLRFVV
CGMDTKASDIDFAWQEIESQLTDLQAEQSLVARKSGNVGDLAQHFQIHLS
TENATHEKSQ*
BS24124.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-PB | 510 | CG10501-PB | 1..510 | 1..510 | 2655 | 100 | Plus |
| amd-PA | 510 | CG10501-PA | 1..510 | 1..510 | 2429 | 90.4 | Plus |
| Ddc-PD | 475 | CG10697-PD | 1..475 | 1..478 | 1240 | 48.1 | Plus |
| Ddc-PB | 475 | CG10697-PB | 1..475 | 1..478 | 1240 | 48.1 | Plus |
| Ddc-PC | 510 | CG10697-PC | 36..510 | 1..478 | 1240 | 48.1 | Plus |
