BS24127.complete Sequence
791 bp assembled on 2011-01-28
GenBank Submission: KX801768
> BS24127.complete
GAAGTTATCAGTCGACATGTGGCGGCCGAGTATCTCGAATTGCGTGTGGA
GCACCCTGCTCCTGGCCATTTTTGTGCAGCAAACGCTAGCACAGCGAACC
CCGACCATATCCTACATCACGCAGGAGCAGATCAAGGATATCGGCGGCAC
AGTGGAGTTCGATTGCTCCGTCCAGTATGCCAAAGAGTACAACGTGCTGT
TCCTGAAGACGGACAGCGATCCCGTCTTCCTCTCCACGGGCTCCACGCTG
GTCATCAAGGATTCGCGCTTCTCGCTGCGGTACGATCCCAACTCGTCCAC
CTACAAGCTGCAGATCAAGGACATTCAGGAGACGGACGCGGGCACCTACA
CCTGCCAGGTGGAGTTCGCACCAGTGATCACCGTGCCGCGTCCTCGTTTG
GGACAGGCTCTGCAGTACGACATGGACTTGGAGTGCCACATTGAGGCCTA
TCCGCCACCGGCCATTGTGTGGACCAAGGACGACATCCAGCTGGCCAACA
ACCAGCACTACAGCATCTCGCACTTCGCCACCGCCGACGAGTATACCGAC
TCGACGCTCCGTGTGATCACCGTTGAGAAGCGCCAGTACGGAGATTATGT
GTGCAAGGCCACCAATCGCTTTGGAGAGGCGGAGGCGCGCGTCAATCTCT
TCGAGACGATCATTCCCGTGTGCCCACCGGCCTGTGGACAGGCGTACATC
GCCGGAGCCGAGGATGTGTCCGCCACTTCGTTCGCTCTTGTGGGCATCCT
GGCGGCGTTGCTCTTCGCCAGATAAAAGCTTTCTAGACCAT
BS24127.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lac-RA | 1080 | CG12369-PA | 662..1080 | 357..775 | 2095 | 100 | Plus |
| Lac-RA | 1080 | CG12369-PA | 1..346 | 17..362 | 1730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lac-RA | 2156 | CG12369-RA | 989..1407 | 357..775 | 2095 | 100 | Plus |
| Lac-RA | 2156 | CG12369-RA | 328..673 | 17..362 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12464463..12464881 | 357..775 | 2095 | 100 | Plus |
| 2R | 25286936 | 2R | 12453517..12453862 | 17..362 | 1730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:41:45 has no hits.
BS24127.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:14 Download gff for
BS24127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lac-RB | 327..1083 | 17..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:20 Download gff for
BS24127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lac-RA | 328..669 | 17..358 | 100 | -> | Plus |
| Lac-RA | 991..1405 | 359..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:19 Download gff for
BS24127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lac-RA | 328..669 | 17..358 | 100 | -> | Plus |
| Lac-RA | 991..1405 | 359..773 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:19 Download gff for
BS24127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12453517..12453858 | 17..358 | 100 | -> | Plus |
| 2R | 12464465..12464879 | 359..773 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:20 Download gff for
BS24127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8341022..8341363 | 17..358 | 100 | -> | Plus |
| arm_2R | 8351970..8352384 | 359..773 | 100 | | Plus |
BS24127.pep Sequence
Translation from 16 to 774
> BS24127.pep
MWRPSISNCVWSTLLLAIFVQQTLAQRTPTISYITQEQIKDIGGTVEFDC
SVQYAKEYNVLFLKTDSDPVFLSTGSTLVIKDSRFSLRYDPNSSTYKLQI
KDIQETDAGTYTCQVEFAPVITVPRPRLGQALQYDMDLECHIEAYPPPAI
VWTKDDIQLANNQHYSISHFATADEYTDSTLRVITVEKRQYGDYVCKATN
RFGEAEARVNLFETIIPVCPPACGQAYIAGAEDVSATSFALVGILAALLF
AR*
BS24127.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lac-PA | 359 | CG12369-PA | 132..359 | 26..252 | 758 | 68.2 | Plus |
| Lac-PA | 359 | CG12369-PA | 1..238 | 1..226 | 672 | 59.1 | Plus |
| Ama-PC | 333 | CG2198-PC | 122..329 | 5..218 | 278 | 27.7 | Plus |
| Ama-PA | 333 | CG2198-PA | 122..329 | 5..218 | 278 | 27.7 | Plus |
| Ama-PB | 341 | CG2198-PB | 130..337 | 5..218 | 278 | 27.7 | Plus |
| Ama-PC | 333 | CG2198-PC | 14..221 | 16..209 | 184 | 26 | Plus |
| Ama-PA | 333 | CG2198-PA | 14..221 | 16..209 | 184 | 26 | Plus |
| Ama-PB | 341 | CG2198-PB | 22..229 | 16..209 | 184 | 26 | Plus |
| CG32791-PB | 432 | CG32791-PB | 24..217 | 33..213 | 165 | 24.3 | Plus |
