BS24128.complete Sequence
398 bp assembled on 2011-01-28
GenBank Submission: KX801200
> BS24128.complete
GAAGTTATCAGTCGACATGAAACAGTACCTGGTGCTTGCCCTCGTCTTTG
CGGCCATTCTGGCCATGATCAGCGGCCATCCTCTGGAGGAACAAAAGATC
ACGCTGGAAGATGCTGAAGCACAGCCGGGAATCGATGATGGCACTGGAGT
TAGGGCCGCTCGTCACTTTGGCGGCGGCTTTGGCCGCGGAGGATATTGCT
GTGGAGGAGGCGGTGGCTTCCGGCGCGGTGGTTTCGGTGGCGGTGGTTAC
GGTGGCGGTGGTTACGGTGGCGGTGGCTATCCAGGTGGCGGCTTTGGCGG
ATATCCCAGAGGTGGATTTGGCGGCGGCAGTGCATCAGCATCGGCGTCAG
CTTCAGCCAGTTCCAGTTGGGGACGTAAATAAAAGCTTTCTAGACCAT
BS24128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Listericin-RA | 366 | CG9080-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Listericin-RA | 450 | CG9080-RA | 29..396 | 17..384 | 1840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11241799..11242166 | 384..17 | 1840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:42:07 has no hits.
BS24128.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:14 Download gff for
BS24128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Listericin-RA | 30..393 | 17..380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:30 Download gff for
BS24128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Listericin-RA | 29..392 | 17..380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:28 Download gff for
BS24128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Listericin-RA | 29..392 | 17..380 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:28 Download gff for
BS24128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11241803..11242166 | 17..380 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:30 Download gff for
BS24128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7129308..7129671 | 17..380 | 100 | | Minus |
BS24128.pep Sequence
Translation from 16 to 381
> BS24128.pep
MKQYLVLALVFAAILAMISGHPLEEQKITLEDAEAQPGIDDGTGVRAARH
FGGGFGRGGYCCGGGGGFRRGGFGGGGYGGGGYGGGGYPGGGFGGYPRGG
FGGGSASASASASASSSWGRK*
BS24128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Listericin-PA | 121 | CG9080-PA | 1..121 | 1..121 | 660 | 100 | Plus |
CG9757-PB | 127 | CG9757-PB | 1..109 | 1..103 | 201 | 47.7 | Plus |
CG9757-PA | 127 | CG9757-PA | 1..109 | 1..103 | 201 | 47.7 | Plus |
CG7294-PA | 127 | CG7294-PA | 1..105 | 1..119 | 198 | 44.4 | Plus |
CG17108-PA | 342 | CG17108-PA | 250..339 | 37..119 | 191 | 54.2 | Plus |
CG7294-PA | 127 | CG7294-PA | 54..123 | 51..119 | 148 | 51.4 | Plus |