Clone BS24128 Report

Search the DGRC for BS24128

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:241
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptListericin-RA
Protein status:BS24128.pep: full length peptide match
Sequenced Size:398

Clone Sequence Records

BS24128.complete Sequence

398 bp assembled on 2011-01-28

GenBank Submission: KX801200

> BS24128.complete
GAAGTTATCAGTCGACATGAAACAGTACCTGGTGCTTGCCCTCGTCTTTG
CGGCCATTCTGGCCATGATCAGCGGCCATCCTCTGGAGGAACAAAAGATC
ACGCTGGAAGATGCTGAAGCACAGCCGGGAATCGATGATGGCACTGGAGT
TAGGGCCGCTCGTCACTTTGGCGGCGGCTTTGGCCGCGGAGGATATTGCT
GTGGAGGAGGCGGTGGCTTCCGGCGCGGTGGTTTCGGTGGCGGTGGTTAC
GGTGGCGGTGGTTACGGTGGCGGTGGCTATCCAGGTGGCGGCTTTGGCGG
ATATCCCAGAGGTGGATTTGGCGGCGGCAGTGCATCAGCATCGGCGTCAG
CTTCAGCCAGTTCCAGTTGGGGACGTAAATAAAAGCTTTCTAGACCAT

BS24128.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Listericin-RA 366 CG9080-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Listericin-RA 450 CG9080-RA 29..396 17..384 1840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11241799..11242166 384..17 1840 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:42:07 has no hits.

BS24128.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:14 Download gff for BS24128.complete
Subject Subject Range Query Range Percent Splice Strand
Listericin-RA 30..393 17..380 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:30 Download gff for BS24128.complete
Subject Subject Range Query Range Percent Splice Strand
Listericin-RA 29..392 17..380 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:28 Download gff for BS24128.complete
Subject Subject Range Query Range Percent Splice Strand
Listericin-RA 29..392 17..380 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:28 Download gff for BS24128.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11241803..11242166 17..380 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:30 Download gff for BS24128.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7129308..7129671 17..380 100   Minus

BS24128.pep Sequence

Translation from 16 to 381

> BS24128.pep
MKQYLVLALVFAAILAMISGHPLEEQKITLEDAEAQPGIDDGTGVRAARH
FGGGFGRGGYCCGGGGGFRRGGFGGGGYGGGGYGGGGYPGGGFGGYPRGG
FGGGSASASASASASSSWGRK*

BS24128.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
Listericin-PA 121 CG9080-PA 1..121 1..121 660 100 Plus
CG9757-PB 127 CG9757-PB 1..109 1..103 201 47.7 Plus
CG9757-PA 127 CG9757-PA 1..109 1..103 201 47.7 Plus
CG7294-PA 127 CG7294-PA 1..105 1..119 198 44.4 Plus
CG17108-PA 342 CG17108-PA 250..339 37..119 191 54.2 Plus
CG7294-PA 127 CG7294-PA 54..123 51..119 148 51.4 Plus