BS24129.complete Sequence
896 bp assembled on 2011-01-28
GenBank Submission: KX801416
> BS24129.complete
GAAGTTATCAGTCGACATGTTGCGTAACAGGCTGATAGATGGAGTCAGGC
GAATAAAACCCATACTTTGCGGGGGGCAATCCCTGCGATCCCTTGCCAAT
GGCGCGACTTCAAAGCTGACAACCATAGAGGTCGATGATAGGAGTGGGAT
TGCCACTCTGTCAATGAACCTGCCACCGGTGAACACTTTGACCATGGAGC
TGATGCACGACCTCATCGATTCAATCAATCAGATTGAGAGCAACAAGAGC
CGCGGTCTCATCCTGACTTCAAGCAATGACAAGGTCTTCTCCGCCGGCCT
CGATCTCAACGAGATGCTGAATCCGGATGTGGAGCGACTGCGATTATTCT
GGACTCGGTTCCAGGATTTGTGGCTGGCCCTCCATCTTTGTGGCCTTCCC
ACAGCAGCGGCAATCAATGGACACTCACCTGCCGCAGGCTGTGTCCTGGC
AACCGCCTGTGAGTATCGCGTGATGTTGCCGAATCTCTTTATCGGTATAC
ATGCCACCCGGTTTAGCTTCGTCATCTCGAAGTGGATGATGAACTCGTAC
CAGAGCGTTCTACCCCGCAGAATTGTGGAGCGAGCGCTGAATCAAGGTAA
GCTCTTCGCCAGCCAGGAAGCTCTGGATGTGGGCCTTGTGGACGAGATCG
CGTGTAGCAAAGAGGAAGCGCTCTCCAAGTGCGCAGCCTTCATAGCCACC
TTTGACAAGACCAACCCGGTGGCCAGGTGCCTAACCAAGCGAATGTGTCG
GGAGCCAGATGTGCGGGAGCTGCTTCAGGATAGAGCTGCGGATCTGAAGG
AGTGCGTCGACTATGTCACTACTCCGCTATTCCAGGAGGGACTCTGTGCC
CACTTGGAGGGTCTCAAGAAGAGAAAATAGAAGCTTTCTAGACCAT
BS24129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4592-RB | 864 | CG4592-PB | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG4592-RA | 864 | CG4592-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4592-RB | 1105 | CG4592-RB | 108..972 | 16..880 | 4325 | 100 | Plus |
| CG4592-RA | 1011 | CG4592-RA | 108..972 | 16..880 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9922266..9922727 | 419..880 | 2310 | 100 | Plus |
| 2L | 23513712 | 2L | 9921740..9921995 | 16..271 | 1280 | 100 | Plus |
| 2L | 23513712 | 2L | 9922064..9922211 | 272..419 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:42:41 has no hits.
BS24129.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:15 Download gff for
BS24129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4592-RA | 108..959 | 22..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:07:45 Download gff for
BS24129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4592-RA | 114..965 | 22..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:39 Download gff for
BS24129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4592-RA | 114..965 | 22..873 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:39 Download gff for
BS24129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9922064..9922210 | 272..418 | 100 | -> | Plus |
| 2L | 9921746..9921995 | 22..271 | 100 | -> | Plus |
| 2L | 9922266..9922720 | 419..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:07:45 Download gff for
BS24129.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9922064..9922210 | 272..418 | 100 | -> | Plus |
| arm_2L | 9921746..9921995 | 22..271 | 100 | -> | Plus |
| arm_2L | 9922266..9922720 | 419..873 | 100 | | Plus |
BS24129.pep Sequence
Translation from 16 to 879
> BS24129.pep
MLRNRLIDGVRRIKPILCGGQSLRSLANGATSKLTTIEVDDRSGIATLSM
NLPPVNTLTMELMHDLIDSINQIESNKSRGLILTSSNDKVFSAGLDLNEM
LNPDVERLRLFWTRFQDLWLALHLCGLPTAAAINGHSPAAGCVLATACEY
RVMLPNLFIGIHATRFSFVISKWMMNSYQSVLPRRIVERALNQGKLFASQ
EALDVGLVDEIACSKEEALSKCAAFIATFDKTNPVARCLTKRMCREPDVR
ELLQDRAADLKECVDYVTTPLFQEGLCAHLEGLKKRK*
BS24129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4592-PB | 287 | CG4592-PB | 1..287 | 1..287 | 1475 | 100 | Plus |
| CG4592-PA | 287 | CG4592-PA | 1..287 | 1..287 | 1475 | 100 | Plus |
| CG4598-PB | 281 | CG4598-PB | 1..277 | 1..286 | 796 | 55.2 | Plus |
| CG4598-PA | 281 | CG4598-PA | 1..277 | 1..286 | 796 | 55.2 | Plus |
| CG4594-PB | 280 | CG4594-PB | 7..277 | 23..286 | 755 | 54.6 | Plus |
