BS24133.complete Sequence
2039 bp assembled on 2011-02-18
GenBank Submission: KX801345
> BS24133.complete
GAAGTTATCAGTCGACATGATAACCCTATTAAAACCAATTCATAAATGGC
TCTGCTTCTGCCTAATTGCAATAATCGTAATTCTCGGCATCAAAACCCAA
AATGCAAATACTAAGCCCAGAGTTTCAGAAGTCACAGGATCGGATGACAC
AAATTCCGACATTCCTCCTGCTGAAGAAGATCGAAATGTACAGGATGTAG
TCCGGCCCGCATATTTTGTGGAGTCCGCCAAGTGCAAGATCCCGTATGTT
GATCCCTTCGCCTCAGATGCAATGGCCATTTTCCACCCCGAGCATTTTGA
GACCTGCTCAAACGAAACCGCCCTGGTTACTCCGATCTATGACATCAGTC
GGCAGCGATATGTACTCTTCATCAATGAGTCGTTAGCCTCCATTATTCTC
AACTCCAATGGGGGGGAGTACAATTGCTATTATCAGGAGATAACGCGGGA
CCGTAAGCACGACAGTTATGATAAGATGGAGCGAAAATACTTCTCTCAGA
ACTACGAGGTGCCGCTCCATGTTGAGGGCCTGATCTTGACCTGCCATCGT
CTTGGCAACGAGTCGGATATTTTGCAGAGCGATGCGTATAACCTCATTCA
ATACAGGCCACCACCCAAAGGACTCTCGCTGAAACCGTCCAAGAGGAAGC
CAAGTGTCCTTATGTTCGGCATAGACAGCCTTTCGCGGATCAATTTGCGT
AGAACTATGCCGAAGGTCTATAAGTTCCTAACGAGGGACGGGTGGTTCGA
GCAGCAAGGATACAATAAGATAGGCGACAACACCTTCCCCAATCTGTTGG
CCATTTTGACAGGCTACAATCCAGAGTCGGCCATTAAGAAGGTGTGCAAC
TGGCACGAGGATGGGTGCCTAGATAGGACCCCTTTTATATGGCACTACTT
CCGGAATGCCAGCTATCTCACAGCCTATGCTGAGGATGAGGCAGGCATTA
ATACATTCAACTATTGGAAACCGGGTTTCCTGGAGCAGCCCACCGACTTC
TACTTAAGGCCCTTGCAGAAGGCCATTGAATCGGGCCTGAACACCTGGAA
ATGCAGTGACTGCTCGATGAAGTACTGTATCGGCCGGCGGATCACGAGCA
GTTATGCCTACGACATGGCCAGAAATTTTGCCAACCGTTTCGTGGATGAG
CGACCCATTTGGGGTCTGTTCTGGTCAAACAGTTTCAGCCACGACAGCTT
CCAAATGCCCTCGAAAATGGAGGACTATGTGCTTCAGTACCTGCTGGACT
TCGAGGCCGATGGTGTGTTCGATCAGAGTATTATGGTGTTCCTCTCGGAT
CATGGCTCACGCTATGGCAGACTCATGTCCCTGCCGAGTGGATTCCTGGA
AGAGCGTCTTCCCTCGATGTTTATCTATTTGCCGCCTTGGTTCCGGGCTC
AGTATCCGGAATACGCCAGGGCCCTTGAGCTGAATCGGAATCGGCTTACA
TCCAACTACGATCTGCACAACACCCTGAAACACATCATCGAACTGGGCGG
CACTCCAGATGGTCAAACATTGCCCAAAGCGGCCGACTGTCCCAAGTGCC
AATCCCTTTTTTATCCCGTCGATGAGACAAGGTCGTGTGAGGATGCCGGA
ATACCGGAGCACTTCTGCACCTGTGTGCCTTACAAAAGACTGGATACGCA
ATGGGCAAAGAGCATTGCCCCCAAGGTGATCGGTCGAATCAACGAGTATC
TGGCCGGCAGGAATCTGAGTAAGATTTGTTCTGAACTCACGCTCAGCTAT
ATTCACCTGACAGAAATGAAAGTCGAGCTAGACCAGAACTTCCACGACGA
TGTGCCTCGTGCGGAGTTAGGCACCTATCGCACCATGTTCAAGGTGAAGC
AGAACTCCGCCGACTTCCGGGCCACCGTTATCTTCAATAATGTTACAGAT
TCCGTGGAGGTGGAGGTGCCTACTATTAGTCGGCTCGACAGCTATGAAAA
TGTTTCAACATGTGTAAAAGATAAAACCGACAAGATGTATTGTATTTGCA
AGTGTGATATCAAAGATGATTAGAAGCTTTCTAGACCAT
BS24133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9988-RA | 2007 | CG9988-PA | 1..2007 | 17..2023 | 10035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9988-RA | 2274 | CG9988-RA | 12..2021 | 16..2025 | 10050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28637289..28638546 | 768..2025 | 6290 | 100 | Plus |
| 3R | 32079331 | 3R | 28636422..28636881 | 16..475 | 2300 | 100 | Plus |
| 3R | 32079331 | 3R | 28636941..28637235 | 475..769 | 1475 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rooA | 7621 | rooA ROOA_LTR 7621bp | 5865..5911 | 2032..1986 | 127 | 74.5 | Minus |
BS24133.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:40 Download gff for
BS24133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9988-RA | 12..2018 | 17..2023 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:50:28 Download gff for
BS24133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9988-RA | 13..2019 | 17..2023 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:52 Download gff for
BS24133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9988-RA | 13..2019 | 17..2023 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:52 Download gff for
BS24133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28636423..28636880 | 17..474 | 100 | -> | Plus |
| 3R | 28636941..28637235 | 475..769 | 100 | -> | Plus |
| 3R | 28637291..28638544 | 770..2023 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:50:28 Download gff for
BS24133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24462145..24462602 | 17..474 | 100 | -> | Plus |
| arm_3R | 24462663..24462957 | 475..769 | 100 | -> | Plus |
| arm_3R | 24463013..24464266 | 770..2023 | 100 | | Plus |
BS24133.pep Sequence
Translation from 16 to 2022
> BS24133.pep
MITLLKPIHKWLCFCLIAIIVILGIKTQNANTKPRVSEVTGSDDTNSDIP
PAEEDRNVQDVVRPAYFVESAKCKIPYVDPFASDAMAIFHPEHFETCSNE
TALVTPIYDISRQRYVLFINESLASIILNSNGGEYNCYYQEITRDRKHDS
YDKMERKYFSQNYEVPLHVEGLILTCHRLGNESDILQSDAYNLIQYRPPP
KGLSLKPSKRKPSVLMFGIDSLSRINLRRTMPKVYKFLTRDGWFEQQGYN
KIGDNTFPNLLAILTGYNPESAIKKVCNWHEDGCLDRTPFIWHYFRNASY
LTAYAEDEAGINTFNYWKPGFLEQPTDFYLRPLQKAIESGLNTWKCSDCS
MKYCIGRRITSSYAYDMARNFANRFVDERPIWGLFWSNSFSHDSFQMPSK
MEDYVLQYLLDFEADGVFDQSIMVFLSDHGSRYGRLMSLPSGFLEERLPS
MFIYLPPWFRAQYPEYARALELNRNRLTSNYDLHNTLKHIIELGGTPDGQ
TLPKAADCPKCQSLFYPVDETRSCEDAGIPEHFCTCVPYKRLDTQWAKSI
APKVIGRINEYLAGRNLSKICSELTLSYIHLTEMKVELDQNFHDDVPRAE
LGTYRTMFKVKQNSADFRATVIFNNVTDSVEVEVPTISRLDSYENVSTCV
KDKTDKMYCICKCDIKDD*
BS24133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9988-PA | 668 | CG9988-PA | 1..668 | 1..668 | 3607 | 100 | Plus |
| CG18088-PC | 663 | CG18088-PC | 11..662 | 8..665 | 1840 | 51.7 | Plus |
| CG18088-PB | 663 | CG18088-PB | 11..662 | 8..665 | 1840 | 51.7 | Plus |
| CG18088-PA | 663 | CG18088-PA | 11..662 | 8..665 | 1840 | 51.7 | Plus |
| CG32985-PA | 618 | CG32985-PA | 18..609 | 62..661 | 1502 | 48.1 | Plus |
