BS24136.complete Sequence
1250 bp assembled on 2011-01-28
GenBank Submission: KX806304
> BS24136.complete
GAAGTTATCAGTCGACATGCGTTTGTTAAAGGAGGAAATTGCCCAGTTTC
ACGAGCAGTCGCTGGAGAAGTATGATGGACTGGATCCGCATGATCTGTAT
GTACTATATAAGAAGCTTCAGATGGAGCTGGAGCTCATTCAGGTGCAGGA
GGATTATATCAAGGAGGAGCAACGCAATCTGAAGAAGGAGTTCATACACG
CTCAGGAGGAAGTTAAGCGCATAAAAGCCGTGCCTCTGGTCATTGGCCAG
TTTCTGGAGGCGGTGGATGAAAACAACGGCATAGTGGCCTCCACCACCGG
ATCCAATTACTATGTTCGAGTGCTATCCACCATTGACAGGGAGCAACTGA
AGCCGTCCTCTTCGGTTGGGCTGCACAAGCAAAGCAATTGTCTGGTCGAT
CTGGTGCCACCGGAGGCGGACAGCACCATATCGATGCTATCGCCGGATGA
GAAACCGGATATCAGCTACTCCGACATTGGAGGCTTGGACATCCAGAAAC
AGGAGATACGCGAGGCTGTCGAGCTGCCCTTGACCCACGCCCAGCTTTAC
AAGCAAATTGGCATCGATCCCCCACGCGGCGTCCTCCTTTTTGGACCACC
TGGATGTGGCAAAACCATGCTGGCCAAGGCGGTGGCCCATCATACAACTG
CATCATTTATTCGTGTCGTGGGCTCCGAGTTCGTCCAGAAATACCTAGGC
GAGGGGCCACGCATGGTGCGAGATCTTTTCCGCCTGGCCAAGCAGAATTC
TCCTTCAATTATCTTCATTGATGAGATCGATGCGATTGCCACCAAGCGCT
TTGATGCACAGACAGGTGCTGATCGCGAGGTGCAGCGCATCCTGCTGGAG
CTACTCAACCAAATGGATGGCTTTGATGAGACCACCAACATTAAGGTTAT
CATGGCCACCAATCGTGCAGATACCTTAGATCCGGCTCTGTTACGACCCG
GCCGTTTGGATCGGAAAATTGAGTTACCATTGCCGGATCGTCGCCAGAAG
CGCTTAGTTTTCACCACAATCACCTCGAAAATGAATGTGGGTGAGGATGT
GGATCTGGAGGACATCATTGCACGTCCGGACAAGATCTCCAATGCGGATA
TCAATGCCATTTGCCAAGAGGCTGGTATGCATGCAGTGCGCGAGAATCGC
TATGTGGTCAATGCCAAGGACTTCGAAAAGGGTTATAAGACCAGCGTGCG
CAAGGACGAAGCTCAGCATGAGTTCTATAGCTAGAAGCTTTCTAGACCAT
BS24136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3R-RD | 1218 | CG9475-PD | 1..1218 | 17..1234 | 6075 | 99.9 | Plus |
| Rpt3R-RC | 1218 | CG9475-PC | 1..1218 | 17..1234 | 6075 | 99.9 | Plus |
| Rpt3-RB | 1242 | CG16916-PB | 136..1198 | 128..1190 | 2105 | 79.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3R-RD | 1414 | CG9475-RD | 34..1252 | 17..1235 | 6080 | 99.9 | Plus |
| Rpt3R-RC | 1432 | CG9475-RC | 52..1270 | 17..1235 | 6080 | 99.9 | Plus |
| Rpt3-RB | 1553 | CG16916-RB | 348..1410 | 128..1190 | 2105 | 79.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9754897..9755572 | 1235..560 | 3380 | 100 | Minus |
| 3R | 32079331 | 3R | 9755619..9756163 | 561..17 | 2710 | 99.8 | Minus |
| X | 23542271 | X | 11125580..11126642 | 128..1190 | 2105 | 79.9 | Plus |
| X | 23542271 | X | 21317028..21317332 | 671..975 | 295 | 73.1 | Plus |
| 3R | 32079331 | 3R | 30582600..30582688 | 915..827 | 205 | 82 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:40:27 has no hits.
BS24136.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:12 Download gff for
BS24136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 37..1254 | 17..1234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:50 Download gff for
BS24136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 52..1269 | 17..1234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:44 Download gff for
BS24136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt3R-RC | 52..1269 | 17..1234 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:44 Download gff for
BS24136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9754898..9755571 | 561..1234 | 100 | <- | Minus |
| 3R | 9755620..9756163 | 17..560 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:50 Download gff for
BS24136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5580620..5581293 | 561..1234 | 100 | <- | Minus |
| arm_3R | 5581342..5581885 | 17..560 | 99 | | Minus |
BS24136.pep Sequence
Translation from 16 to 1233
> BS24136.pep
MRLLKEEIAQFHEQSLEKYDGLDPHDLYVLYKKLQMELELIQVQEDYIKE
EQRNLKKEFIHAQEEVKRIKAVPLVIGQFLEAVDENNGIVASTTGSNYYV
RVLSTIDREQLKPSSSVGLHKQSNCLVDLVPPEADSTISMLSPDEKPDIS
YSDIGGLDIQKQEIREAVELPLTHAQLYKQIGIDPPRGVLLFGPPGCGKT
MLAKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQNSPSIIF
IDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDETTNIKVIMATNR
ADTLDPALLRPGRLDRKIELPLPDRRQKRLVFTTITSKMNVGEDVDLEDI
IARPDKISNADINAICQEAGMHAVRENRYVVNAKDFEKGYKTSVRKDEAQ
HEFYS*
BS24136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt3R-PD | 405 | CG9475-PD | 1..405 | 1..405 | 2058 | 100 | Plus |
| Rpt3R-PC | 405 | CG9475-PC | 1..405 | 1..405 | 2058 | 100 | Plus |
| Rpt3-PB | 413 | CG16916-PB | 28..412 | 20..404 | 1731 | 85.2 | Plus |
| Rpt3-PA | 413 | CG16916-PA | 28..412 | 20..404 | 1731 | 85.2 | Plus |
| Rpt2-PB | 439 | CG5289-PB | 63..435 | 33..402 | 988 | 50.1 | Plus |
