BS24137.complete Sequence
2333 bp assembled on 2011-02-18
GenBank Submission: KX806395
> BS24137.complete
GAAGTTATCAGTCGACATGTTTATACCAGAAACTTTAAGAGGCTGTATGA
TCGAGACGGACGTTTCTTCTTATTTGCAAACATCATCATCGGGACAGGAT
GAATTTCACCCTTTTATTGAGGCACTCTTACCGTACGTCAAATCATTTTC
CTACTCTTGGTTTAATTTGCAAGCCGCCAAACGAAAATATTATAAGAAAC
ATGAAAAACGTATGTCACTGGAAGAAGAAAGACATTGTAAAGATGAACTC
CAGAATGAAAAGACTGAGGTGAAGCAAAAGTGGGCTTCCCGTCTTCTTGG
AAAACTCAGAAAAGACATTACACAAGAAAGTCGAGAGGATTTTGTGCAAT
CTATAATCGGGAAAAGAAAATCAATTTGTGTTCTCTCAAACCCCGATCAA
AAGGGAAAAATGAGACGAATTGACTGCTTAAGACAGGCTGACAAAGTATG
GCGGCTTGATTTGGTCATGGTTATACTCTTCAAGGCGATTCCATTAGAAA
GCACAGATGGTGAGCGGTTAGAAAAAAATCCGGAATGTTTACATCCAGGA
TTATGTGTAAATCCGTACCACATTAACGTGTCTGTTCGGGAATTGGACTT
GTACTTGGCCAACTTTATAAATACTCATAATTCAATTAACAATACAAATA
CGACTTTCTCAACTACTCCGGGCGTAAGATCGCCACATATAACTATGTAT
AATCGAAGTAATGATCCAAACAGAAAAGATGAGGTCGCTGACATGAAAAA
TGATGTCGTTAAACAAAACCCATATAATGGTGTTGTTTGTAATGATATTA
TTTTAGCAACTGGCGTGTTTTCTTCTCAAGAACTGTGGACATTATCTAAA
GATTTAATTTTAGATGAATCAAATGATATAAACCTAAACTCTAGCCTTAT
AAAGAGGGAGAACGTTGGAGCTACCTATGAGTGTAATACATATCAAATTA
ACTCTGAATCCTCAATTTCTGCTGCTCAGAGTCTTGTTCAATCTGGGTCA
ATTGCGGCTAATCCGATTCCACTTGGATATAGCATTGATTTTATAGATCA
GAGGATTACACAATTATCACAAAGTCCATTGCCACGTACAGAAGGCCCAA
ACGGCGATTCCCATGATGCTAACAAAATCGATCAAAGTAGCTCACCGCCA
ATCACGAGCACTGCATCAGATAATGGCACAAGTAGTTTTTCTTTGATCGT
GAGAGCTACGGATAGCTCTATTGAAGATCCAAAAACTTCACCCATTTCTT
TGCATCGCTATACCTCTTTAAGTAGTCGGACGCTGGCCCAAGCTCTCCCA
CAACATAGTTGCTCCTTGCTACATTCGTCTTCCACTAGTCCGACTAATAC
CTTATATTACCCCCAGCATAATAATACAAGACCATCTCAAACAACTTCCG
TTGAGGAACAAAATCGTGTTGGCTCCGACAAATATTCAACGGAGCCTCAA
GATATTTCGGACTTTGTCACTTATGTTTGTCAAGACACCAGTCATACGAC
AACTATAACAGGATCAGCTGAAAACCATTCATTTCAACACTCCCATACAC
TCCCACAAGGTCATGGTCATTCGCCGCATTTTCAAATTCATCAACAGCTG
CGATCTGCAAAATTAACGACTTCACCATCAACTCATTATCACAGTACAAT
GCTTCCGCCGATGCTGCCACCAATGGCTCGACCTGTAGCTATAATTCGCA
GTAGCAGTGATCTAACCTTAGTCCAATCCCCACCAACTTCTTTGCCACTG
ACAGCCCAATCTACAAGCTTGAACGACAATAGTTGTATAGCGAAACATAG
CCTGCCAACGGATAATAGACTTGCAAGTAACCTTGACAACAGAAATAGCC
CCAATAACACAGATGTCGTTTCACAACACGAAATGACTGGAACTGCATCT
CCTCAACCGCAATCTCACACACCGACATTAGCGAGTCCCCAATCTTATCT
GGATCCTGGGCGATGTAAGCTTTTATCAGCTGGCTCAAACATAGGCAGAA
TTACAACACAAATGTATCCCTCATCAAATAATAGAGAATATTTTAATCAC
TTTCATTCGCAGCCCACATCGCTTTTGGGATATGCCGGCTCTATTTCTAC
AATGTCTGGAGTTATAAGTCCAACAGACCTAACACTTTACTCAGCTCCAA
TGGCTGTATCACGTTCAAGTACCAGGACTAGGTGGAACGAAGAGGAGCAT
AATGTAATTCCACAGTCTGCATCTAGTACAAACATGGATAACACCCAAGT
TATATTAATGGAAGACTCGACTGGTCGTTATATAGATGAGTATTCTAGTC
GTGACTATGTGTCATGAAAGCTTTCTAGACCAT
BS24137.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NfI-RB | 2301 | CG2380-PB | 1..2301 | 17..2317 | 11490 | 100 | Plus |
| NfI-RC | 2289 | CG2380-PC | 1..2289 | 17..2317 | 11275 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NfI-RB | 4575 | CG2380-RB | 139..2439 | 17..2317 | 11490 | 100 | Plus |
| NfI-RC | 4702 | CG2380-RC | 139..2427 | 17..2317 | 11275 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 271069..271849 | 2071..1291 | 3905 | 100 | Minus |
| 4 | 1348131 | 4 | 273115..273714 | 851..252 | 3000 | 100 | Minus |
| 4 | 1348131 | 4 | 271915..272172 | 1292..1035 | 1290 | 100 | Minus |
| 4 | 1348131 | 4 | 270560..270756 | 2267..2071 | 970 | 99.5 | Minus |
| 4 | 1348131 | 4 | 272226..272410 | 1034..850 | 925 | 100 | Minus |
| 4 | 1348131 | 4 | 273761..273918 | 253..96 | 790 | 100 | Minus |
| 4 | 1348131 | 4 | 275579..275660 | 98..17 | 410 | 100 | Minus |
| 4 | 1348131 | 4 | 270450..270499 | 2317..2268 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:32:26 has no hits.
BS24137.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:54 Download gff for
BS24137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NfI-RB | 143..2436 | 23..2316 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:01 Download gff for
BS24137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NfI-RB | 145..2438 | 23..2316 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:40 Download gff for
BS24137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NfI-RB | 145..2438 | 23..2316 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:40 Download gff for
BS24137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 270451..270499 | 2268..2316 | 100 | <- | Minus |
| 4 | 270560..270755 | 2072..2267 | 99 | <- | Minus |
| 4 | 271069..271847 | 1293..2071 | 100 | <- | Minus |
| 4 | 273115..273712 | 254..851 | 100 | <- | Minus |
| 4 | 273761..273916 | 98..253 | 100 | <- | Minus |
| 4 | 275580..275654 | 23..97 | 100 | | Minus |
| 4 | 271915..272172 | 1035..1292 | 100 | <- | Minus |
| 4 | 272226..272408 | 852..1034 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:01 Download gff for
BS24137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 291077..291125 | 2268..2316 | 100 | <- | Minus |
| arm_4 | 291186..291381 | 2072..2267 | 99 | <- | Minus |
| arm_4 | 291695..292473 | 1293..2071 | 100 | <- | Minus |
| arm_4 | 292541..292798 | 1035..1292 | 100 | <- | Minus |
| arm_4 | 292852..293034 | 852..1034 | 100 | <- | Minus |
| arm_4 | 293741..294338 | 254..851 | 100 | <- | Minus |
| arm_4 | 294387..294542 | 98..253 | 100 | <- | Minus |
| arm_4 | 296206..296280 | 23..97 | 100 | | Minus |
BS24137.pep Sequence
Translation from 16 to 2316
> BS24137.pep
MFIPETLRGCMIETDVSSYLQTSSSGQDEFHPFIEALLPYVKSFSYSWFN
LQAAKRKYYKKHEKRMSLEEERHCKDELQNEKTEVKQKWASRLLGKLRKD
ITQESREDFVQSIIGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLV
MVILFKAIPLESTDGERLEKNPECLHPGLCVNPYHINVSVRELDLYLANF
INTHNSINNTNTTFSTTPGVRSPHITMYNRSNDPNRKDEVADMKNDVVKQ
NPYNGVVCNDIILATGVFSSQELWTLSKDLILDESNDINLNSSLIKRENV
GATYECNTYQINSESSISAAQSLVQSGSIAANPIPLGYSIDFIDQRITQL
SQSPLPRTEGPNGDSHDANKIDQSSSPPITSTASDNGTSSFSLIVRATDS
SIEDPKTSPISLHRYTSLSSRTLAQALPQHSCSLLHSSSTSPTNTLYYPQ
HNNTRPSQTTSVEEQNRVGSDKYSTEPQDISDFVTYVCQDTSHTTTITGS
AENHSFQHSHTLPQGHGHSPHFQIHQQLRSAKLTTSPSTHYHSTMLPPML
PPMARPVAIIRSSSDLTLVQSPPTSLPLTAQSTSLNDNSCIAKHSLPTDN
RLASNLDNRNSPNNTDVVSQHEMTGTASPQPQSHTPTLASPQSYLDPGRC
KLLSAGSNIGRITTQMYPSSNNREYFNHFHSQPTSLLGYAGSISTMSGVI
SPTDLTLYSAPMAVSRSSTRTRWNEEEHNVIPQSASSTNMDNTQVILMED
STGRYIDEYSSRDYVS*
BS24137.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NfI-PB | 766 | CG2380-PB | 1..766 | 1..766 | 3996 | 100 | Plus |
| NfI-PC | 762 | CG2380-PC | 1..762 | 1..766 | 3956 | 99.3 | Plus |
| CG46026-PA | 666 | CG46026-PA | 226..645 | 348..752 | 170 | 21.9 | Plus |
