BS24141.complete Sequence
2114 bp assembled on 2011-02-18
GenBank Submission: KX805551
> BS24141.complete
GAAGTTATCAGTCGACATGAATCTGCTGTGCTGCTGTTGTTGCAGTAACA
TGGCACCAAACCAACGCGTCACACGCAAATGGGAACTGTTTGCCGGACGC
AATAAATTCTACTGCGATGGATTGCTAATGTCCGCACCGCACACAGGCGT
CTTCTACTTGACGTGCATCCTGATTACCGGCACCAGTGCGCTCTTCTTTG
CCTTCGACTGTCCCTTTCTGGCGGACAGCATAAATCCGGCCATTCCGATT
GTGGGAGCGGTACTATACTTCTTCACGATGAGCTCCTTGCTGCGCACAAC
CTTCACGGATCCGGGCGTCATACCGCGAGCCTCCAACGATGAGGCCGCCT
ATATTGAAAAGCAAATAGAGGTGCCAAACTCGCTGAACAGTCCCACATAT
CGACCGCCGCCGAGGACCAAGGAGGTCCTGGTCAAAGGACAAACGGTCAA
GCTGAAATACTGTTTCACCTGCAAGATCTTCCGGCCGCCGAGGGCCTCGC
ACTGCAGCCTGTGCGACAACTGCGTGGACCGCTTCGATCACCACTGTCCC
TGGGTGGGAAACTGCGTGGGCAAGCGGAATTATCGGTTCTTTTATTTGTT
TCTAGTCTCATTGGCATTTTTAGCTGTATTTATATTCTCGTGCTCTGTGA
CGCATTTAGTTTTATTGATGAAGAAGGAGCACGAGGTCTTTAATGTAATC
AAGGCGGCGCCCTTCACTGTGATTGTTGTGTTCATTTGCTTCTTCTCGAT
ATGGTCGGTGATCGGCCTGGCCGGCTTCCATACCTATCTGACGACTAGCG
ATCAGACAACCAACGAGGATCTCAAGGGATCCTTCTCCTCCAAAGGCGGT
CCACGCACCCAAAATCCCTATTCGCGGGGTAACATTTGCCTGAACTGCTG
TCACATCCTGTGCGGACCCATGACGCCCTCGCTGATCGATAGACGCGGCA
TCGCCACCGACGAGTTCATCCAGCAGATGCAGCACCAGTCGAGTCCGCGG
CACGCACTGAGCGATGTGCTGAGTGCCTCGCACATGGTCACCACCTCGCA
GCCCATGATGGGTGGTTTAGGTGGTGGTGGCATCGGTGGTGCCGGCGGCG
GGATCAGCATTGGTGGAGCGGAGCTAAAGCCCCGATTCTACGACGAGTCC
AATCCCTCCTCCTCGACACTGGAGGGCAACGGAGGTGCCATCAATGGCCA
TGGGAATGGCCATGGCAACGGCTTCGATCATCCGCCGCCCAGTTACGATC
TTGTCCAAAACGGTAATTCCAATAGTCTAGCTCAGCTGGTGGACAACGAG
ATACCGCTGGTCCAAATGGACATTCCGGCTTATACCCACCAAACGGCCAC
CCAGGCGCGTCAGTACCGCCATCGTCATCACAAACAGCGCCAGATATGCA
ATGGCGGCACTGTTAGCTATGAGAATCAGTTGGCCAACGCCAGCAGCGAG
GATGAGCTGGATGATCCAGATGTTGTGGTCGTGGGCAGTCCCGAAGTGGT
GGCTGCCGTGGCAGCCATAGCCTCCAATAAGGCAAGAGAAATGCGCAACC
GCAGCGGAAGCTATAGCAATCTCTTCGATGCTGACTTCGAGGCGGCACTG
GTCAACTCCTCATTGGCGGATAACCATGTCAGAGGTGAAGGAGCAAGCAG
TTCCGGAAAGCCCTCTGCGGGCGCAGCTCTATTAGCGGCTGCCATCAGTG
GAAAAACGGAGAACATGTATAGCAATGTGTTGCCAGTGGACAATGATACG
GATCCGGCCGATTCCACGCTGCATGTATACTCCAATATCATCGATGAACG
CAAGCAGCAGGAACAGGCAAACAATGTACTGTCCTCCACTCTGCTCTGCG
ACGATCTCGACCTGGACGATCCGGTTAGTGCTTCGTGTCATGTGAAAAGA
AAGTCCCTGGGCGATGGAGCCGAGCAGGTGAAGTCGGCGGAGAGATTGAG
AATGCTGCACGACAACACGATGATAGACACGGCCTTGGATTTGGACAGCT
TGGATGGCTCCAGCATGGGCAACAACTCACAGTCGTGCCTGGTGAAGTCG
GGCAAACCGAATGCCACTTCCGTGACCACAAACGTGGCCATAGTCTAAAA
GCTTTCTAGACCAT
BS24141.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| app-RR | 2082 | CG42318-PR | 1..2082 | 17..2098 | 10410 | 100 | Plus |
| app-RM | 2082 | CG42318-PM | 1..2082 | 17..2098 | 10410 | 100 | Plus |
| app-RL | 2082 | CG42318-PL | 1..2082 | 17..2098 | 10410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| app-RR | 4156 | CG42318-RR | 1211..3292 | 17..2098 | 10410 | 100 | Plus |
| app-RM | 4537 | CG42318-RM | 1592..3673 | 17..2098 | 10410 | 100 | Plus |
| app-RL | 4559 | CG42318-RL | 1614..3695 | 17..2098 | 10410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12207102..12207938 | 2098..1262 | 4185 | 100 | Minus |
| 3L | 28110227 | 3L | 12213093..12213299 | 1147..941 | 1035 | 100 | Minus |
| 3L | 28110227 | 3L | 12215615..12215805 | 556..366 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 12219978..12220168 | 207..17 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 12216419..12216579 | 368..208 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 12213719..12213873 | 820..666 | 775 | 100 | Minus |
| 3L | 28110227 | 3L | 12212645..12212769 | 1270..1146 | 610 | 99.2 | Minus |
| 3L | 28110227 | 3L | 12213354..12213475 | 942..821 | 610 | 100 | Minus |
| 3L | 28110227 | 3L | 12213940..12214052 | 665..553 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:28:28 has no hits.
BS24141.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:53 Download gff for
BS24141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RM | 1540..3619 | 17..2096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:14 Download gff for
BS24141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RL | 1614..3693 | 17..2096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:42:09 Download gff for
BS24141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RL | 1614..3693 | 17..2096 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:42:09 Download gff for
BS24141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12207104..12207937 | 1263..2096 | 100 | <- | Minus |
| 3L | 12212653..12212767 | 1148..1262 | 100 | <- | Minus |
| 3L | 12213093..12213297 | 943..1147 | 100 | <- | Minus |
| 3L | 12213354..12213475 | 821..942 | 100 | <- | Minus |
| 3L | 12213719..12213873 | 666..820 | 100 | <- | Minus |
| 3L | 12213940..12214051 | 554..665 | 100 | <- | Minus |
| 3L | 12215618..12215802 | 369..553 | 100 | <- | Minus |
| 3L | 12216419..12216579 | 208..368 | 100 | <- | Minus |
| 3L | 12219978..12220168 | 17..207 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:14 Download gff for
BS24141.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12200204..12201037 | 1263..2096 | 100 | <- | Minus |
| arm_3L | 12205753..12205867 | 1148..1262 | 100 | <- | Minus |
| arm_3L | 12206193..12206397 | 943..1147 | 100 | <- | Minus |
| arm_3L | 12206454..12206575 | 821..942 | 100 | <- | Minus |
| arm_3L | 12206819..12206973 | 666..820 | 100 | <- | Minus |
| arm_3L | 12207040..12207151 | 554..665 | 100 | <- | Minus |
| arm_3L | 12208718..12208902 | 369..553 | 100 | <- | Minus |
| arm_3L | 12209519..12209679 | 208..368 | 100 | <- | Minus |
| arm_3L | 12213078..12213268 | 17..207 | 100 | | Minus |
BS24141.pep Sequence
Translation from 16 to 2097
> BS24141.pep
MNLLCCCCCSNMAPNQRVTRKWELFAGRNKFYCDGLLMSAPHTGVFYLTC
ILITGTSALFFAFDCPFLADSINPAIPIVGAVLYFFTMSSLLRTTFTDPG
VIPRASNDEAAYIEKQIEVPNSLNSPTYRPPPRTKEVLVKGQTVKLKYCF
TCKIFRPPRASHCSLCDNCVDRFDHHCPWVGNCVGKRNYRFFYLFLVSLA
FLAVFIFSCSVTHLVLLMKKEHEVFNVIKAAPFTVIVVFICFFSIWSVIG
LAGFHTYLTTSDQTTNEDLKGSFSSKGGPRTQNPYSRGNICLNCCHILCG
PMTPSLIDRRGIATDEFIQQMQHQSSPRHALSDVLSASHMVTTSQPMMGG
LGGGGIGGAGGGISIGGAELKPRFYDESNPSSSTLEGNGGAINGHGNGHG
NGFDHPPPSYDLVQNGNSNSLAQLVDNEIPLVQMDIPAYTHQTATQARQY
RHRHHKQRQICNGGTVSYENQLANASSEDELDDPDVVVVGSPEVVAAVAA
IASNKAREMRNRSGSYSNLFDADFEAALVNSSLADNHVRGEGASSSGKPS
AGAALLAAAISGKTENMYSNVLPVDNDTDPADSTLHVYSNIIDERKQQEQ
ANNVLSSTLLCDDLDLDDPVSASCHVKRKSLGDGAEQVKSAERLRMLHDN
TMIDTALDLDSLDGSSMGNNSQSCLVKSGKPNATSVTTNVAIV*
BS24141.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:29:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| app-PR | 693 | CG42318-PR | 1..693 | 1..693 | 3665 | 100 | Plus |
| app-PM | 693 | CG42318-PM | 1..693 | 1..693 | 3665 | 100 | Plus |
| app-PL | 693 | CG42318-PL | 1..693 | 1..693 | 3665 | 100 | Plus |
| app-PT | 693 | CG42318-PT | 1..693 | 1..693 | 3665 | 100 | Plus |
| app-PS | 476 | CG42318-PS | 1..476 | 218..693 | 2473 | 100 | Plus |
