BS24143.complete Sequence
884 bp assembled on 2011-01-28
GenBank Submission: KX803102
> BS24143.complete
GAAGTTATCAGTCGACATGAGTCAGTCTTGTATACCAGTGAGCGCAAAGA
TGTCGAAGGCAAAGAAGGTTTTGGATGAAGCCCGAGAAACTCACAATCCC
GAGTTGGATTTGGCCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGG
ACTGTTCAACATGTCCAACATCACGCGCTTGACCCTGTCCCACAACAAGA
TCAGCGTAATCAGTCCGGGAATCGCGAACCTACTGAATCTGGAGATCCTG
AACCTCTCGAACAACCAGCTGACCGAACTGCCCGTTTCGCTGTCGTCCAT
GCCAAAGCTACGCATCCTCAATGTGTCCATCAATCGGCTGATAAATCTTC
CTCGCGGCTTTGGAGCCTTTCCGGTGCTGGAAGTGCTCGACCTGTCCTAC
AACAATCTCAACGAACAGGTCCTGCCTGGTAATTTCTTTGGTATGGAGAC
ACTGCGTGCTCTGTATCTGGGCGACAATGACTTCGAGTATATACCGAAGG
AGGTGGGTCAGCTGAAGAATCTGCAGATACTCGGATTGCGTGACAACGAT
CTTCTGGAATTGCCCCGCGAAGTTGGGGATTTGGTGCGACTGCGGGAGCT
ACATATTCAAAACAATAGGCTGCAGGTGCTGCCACCAGAGATCGCCCAGT
TGGACCTACTGAGCAACAAGTCGGTCATGAAGATGGAGGAGAATCCCTGG
GTCAATCCCATCGCCGAGCAATATCTGCTGGGCATTAGTCACGTCATCGA
CTACCTCAAAACGGAGACCTATAAGATCATCTACAACCGCCACTTGCAAG
CAGGACGCAGTGGACCGCCGCCACCCAAAGCTGACAAAAGCAAGAAGGCC
TCTCGAATTCGCGCATAGAAGCTTTCTAGACCAT
BS24143.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ics-RC | 852 | CG9031-PC | 1..852 | 17..868 | 4260 | 100 | Plus |
| ics-RB | 852 | CG9031-PB | 1..852 | 17..868 | 4260 | 100 | Plus |
| ics-RA | 852 | CG9031-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ics-RC | 1716 | CG9031-RC | 606..1457 | 17..868 | 4260 | 100 | Plus |
| ics-RB | 1063 | CG9031-RB | 25..876 | 17..868 | 4260 | 100 | Plus |
| ics-RA | 1335 | CG9031-RA | 297..1148 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13639860..13640481 | 777..156 | 3110 | 100 | Minus |
| 2L | 23513712 | 2L | 13641110..13641248 | 155..17 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 13639706..13639796 | 868..778 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:44:44 has no hits.
BS24143.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:18 Download gff for
BS24143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 25..876 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:41 Download gff for
BS24143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 297..1148 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:25 Download gff for
BS24143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ics-RA | 297..1148 | 17..868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:25 Download gff for
BS24143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13639706..13639796 | 778..868 | 100 | <- | Minus |
| 2L | 13639860..13640481 | 156..777 | 100 | <- | Minus |
| 2L | 13641110..13641248 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:41 Download gff for
BS24143.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13641110..13641248 | 17..155 | 100 | | Minus |
| arm_2L | 13639706..13639796 | 778..868 | 100 | <- | Minus |
| arm_2L | 13639860..13640481 | 156..777 | 100 | <- | Minus |
BS24143.pep Sequence
Translation from 16 to 867
> BS24143.pep
MSQSCIPVSAKMSKAKKVLDEARETHNPELDLADKGLSSFEELPGLFNMS
NITRLTLSHNKISVISPGIANLLNLEILNLSNNQLTELPVSLSSMPKLRI
LNVSINRLINLPRGFGAFPVLEVLDLSYNNLNEQVLPGNFFGMETLRALY
LGDNDFEYIPKEVGQLKNLQILGLRDNDLLELPREVGDLVRLRELHIQNN
RLQVLPPEIAQLDLLSNKSVMKMEENPWVNPIAEQYLLGISHVIDYLKTE
TYKIIYNRHLQAGRSGPPPPKADKSKKASRIRA*
BS24143.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ics-PC | 283 | CG9031-PC | 1..283 | 1..283 | 1434 | 100 | Plus |
| ics-PB | 283 | CG9031-PB | 1..283 | 1..283 | 1434 | 100 | Plus |
| ics-PA | 283 | CG9031-PA | 1..283 | 1..283 | 1434 | 100 | Plus |
| f-cup-PD | 474 | CG9611-PD | 40..253 | 30..218 | 257 | 33.3 | Plus |
| f-cup-PI | 522 | CG9611-PI | 88..301 | 30..218 | 257 | 33.3 | Plus |
| f-cup-PD | 474 | CG9611-PD | 104..299 | 28..227 | 225 | 34.7 | Plus |
| f-cup-PD | 474 | CG9611-PD | 129..329 | 30..225 | 183 | 28.1 | Plus |
