BS24147.complete Sequence
2750 bp assembled on 2011-02-18
GenBank Submission: KX805111
> BS24147.complete
GAAGTTATCAGTCGACATGGGCTGTTCTCCGAGTACTTTGCCCCCCGCCC
CTTCCGCTGGTCAGACCGGCGAACGAGGATCCCTGCCGCTGGACGCCTCT
GAAAAGGACGAGAGCCGCCTCTTCTGCATCAAGCTGCGGCGCAGCCGCCT
GCGCCGCTGCAGCTGTGGGGGCGTGACCTTGCAGCCCCCCAGCGACGGGA
ATGGCAGCACGGCCGGAGACAACCTGTGCGGCCAGGTGCTCCTCAATCCG
CTGCAGACCAAGAGCGAGGCCGACTACGAAAAGCTGAGCACCGGCAAAAA
GGACTCGATTGTGACGGTGGCCGCCCTGGGCAACTTTACACACAGCGTAG
TGCGACGGGCCACTGGAAGCACAGGCACATCGGGCACCAGTTCATCCGGC
GGGAACAGCCGTCCAGGTCACCGCAAGTCATCACTAGCCCTCGCTCTCAC
CCCGGAAGATGAGCCGATGGACGTCTACCAGCGAAATCTCATGGACCTGA
AGTATCCAACCGTGCTACCACCGAATCCCCCACTTAAGGCCCTTCTGGTT
TTCCACAAGTCGGACAGCATCTGCGAGGCGATCACCGCGGCCTGCCAGCG
CCACCAGCTGGACGTTACGCTGGTCAAGTCCAAGGAGGAGGCCCTGGACA
CTCTGCAGAAGTCGTACGCCACCGCCCAGTGCTACCACCTAATCATAATT
GATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGAACCAT
TCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTGCAAGA
AGAGTTTCTTCGAAAAGGATGATGTGCTAATTGCTCTATTGGACGCTGGC
GTTAATAGATGCGTAGCGGAGACGACCAACCTGGCCATGTGCAGTGTGGA
ACTGAAGCAGATACTGCACTCCATCATCCGGCCGCACAATGTCATGTCCA
CTCAACAGGCCCTCTACACGGCTCTGCATCGGCTAAAGGAGGTGGTGCTC
ATCACGGACGACTTGCTGCGGATTCAGTACGCGAACCGTGCCACCGAGAG
GCTGCTCAACATGCGGCTGGACGAGATCATTAGCAAGCAGCTGGAGGACA
TATTTGTGTCGGACCTCTCCACCATCAGCGAGCAGTGCAAGAACATCAAG
GAGTTCGATGGCATCCTGACGGTGCGTCGCAAGAGCCAGGAGGGCATACC
CATGCACGTGCGCGTCGTGCCGGTGGCCTGCATAGGCAGCGCCCCCACGC
ACCTGATTTTCAACTTTGATGTGCCCGGCGGGCAGATGGACTTCATAGCC
ACGCTGCCGCAGCCCAAGGAGGCGCCTCGGGGCTCCCTGCACTCGGTGCG
GCGCTGCAGCTTTGATGTCCGCTCCATCGCCTCGGACGGATTGCGGAGGA
CGAGCTTGGCCAAGCTGACGTCGCTGCCACTGGAGGCACCCATCACTAAA
GAGAATTGTTCGGCCGATGAGGCGCGTCTCATAGACAAGGTCTTGGAGTT
CCTGAAGCGTGAGGGACTCTACAGTCCGCAGATGAAGGAGATACGAACGG
ACGATCCCATAGCCACCGATCTAATCGGTGCCCTGCTAACGGGTCCCAGC
GTGTACTCATCGCGCCGCAGCTCGAATGACTCCATCATACGCACTGGCAG
CTCCACGAGAACTGCCGCCATTGTGCCCGCCAAAATGAAGTCCAATCCCA
TCATCATGGAACTACTTGACGAATCTCTCAGCTGGGACTTTGATATTTTC
AAATTGGAGGAGATCACCGACTACCACCCGCTGCTCTACCTGGGCATGGA
GATGTTCCGCCGCTTCGACGTCTTTGCCACCCTGAACATCGATGAGAACG
TGTGCAAGGCGTGGTTGGCAGTGATTGAAGCCCACTACCGCAAGAGCAAC
ACATATCACAACAGCACCCATGCCGCGGATGTGATGCAGGCCACTGGCGC
TTTCATCACCCAACTAACCAACAAGGATATGCTGGTGATGGATCGCATGG
AGGAGGCGACTGCCTTGATCGCCGCCGCCGCCCACGATGTGGATCATCCT
GGTCGCTCATCCGCCTTCTTGTGCAACTCCAACGACGCCCTGGCCGTTCT
ATACAATGATCTGACTGTGCTGGAGAACCATCACGCGGCAATCACCTTTA
AGCTGACACTGGGCGACGACAAGATCAACATTTTCAAGAACCTGGACAAG
GAGACATACAAGTCGGCACGCAGCACCATCATTGACATGATCCTGGCCAC
CGAGATGACCCGCCACTTTGAGCACCTGGCCAAGTTCGTGAGCGTTTTTG
GCGGCGAGGAGCCGCGTGATCACAATCCCCAAACGGATGAGGAGACGTCC
ATACTCATGCGTCGCATGCTGATCAAAGTGGCCGATGTGAGCAATCCCGC
CAGGCCGATGCAATTCTGCATCGAGTGGGCCCGCCGGATAGCCGAGGAGT
ACTTCATGCAGACGGACGAGGAGAAGCAGCGCCACCTGCCCATCGTGATG
CCGATGTTCGATCGGGCCACCTGCAGCATACCAAAGAGCCAGATCGGCTT
CATCGAATACATCATACAGGACATGATGCACGCCTGGGAGAGCTTCATCG
ACATGCCACAGCTGATCACCTACATGCAGATCAACTACTCGCAATGGAAG
AAGTACGACGAGCAGGGCGTCAACACGCTGGCGGAGATCATGGCCAAGCA
GCCACCGGTGGGCAAGATGGCCAACTCCAAATAGAAGCTTTCTAGACCAT
BS24147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde8-RE | 2718 | CG45019-PE | 1..2718 | 17..2734 | 13590 | 100 | Plus |
| Pde8-RK | 2745 | CG45019-PK | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| Pde8-RI | 2745 | CG45019-PI | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| Pde8-RK | 2745 | CG45019-PK | 1462..2745 | 1451..2734 | 6420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde8-RE | 5393 | CG45019-RE | 520..3238 | 16..2734 | 13595 | 100 | Plus |
| Pde8-RK | 5389 | CG45019-RK | 489..1923 | 16..1450 | 7175 | 100 | Plus |
| Pde8-RI | 5562 | CG45019-RI | 662..2096 | 16..1450 | 7175 | 100 | Plus |
| Pde8-RK | 5389 | CG45019-RK | 1951..3234 | 1451..2734 | 6420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23678218..23678489 | 2321..2592 | 1360 | 100 | Plus |
| 2R | 25286936 | 2R | 23665620..23665887 | 16..283 | 1340 | 100 | Plus |
| 2R | 25286936 | 2R | 23677403..23677654 | 1689..1940 | 1260 | 100 | Plus |
| 2R | 25286936 | 2R | 23677713..23677938 | 1938..2163 | 1130 | 100 | Plus |
| 2R | 25286936 | 2R | 23675775..23675989 | 1237..1451 | 1075 | 100 | Plus |
| 2R | 25286936 | 2R | 23674412..23674619 | 537..744 | 1040 | 100 | Plus |
| 2R | 25286936 | 2R | 23675538..23675708 | 1069..1239 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 23678001..23678159 | 2162..2320 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 23678547..23678689 | 2592..2734 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 23677048..23677189 | 1451..1592 | 710 | 100 | Plus |
| 2R | 25286936 | 2R | 23675352..23675466 | 956..1070 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 23671976..23672088 | 369..481 | 565 | 100 | Plus |
| 2R | 25286936 | 2R | 23675107..23675206 | 860..959 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 23677248..23677347 | 1591..1690 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 23665949..23666036 | 282..369 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 23674802..23674863 | 743..804 | 310 | 100 | Plus |
| 2R | 25286936 | 2R | 23674283..23674343 | 479..539 | 305 | 100 | Plus |
| 2R | 25286936 | 2R | 23674929..23674985 | 803..859 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:22:27 has no hits.
BS24147.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:41 Download gff for
BS24147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde8-RH | 492..3203 | 17..2728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:51:56 Download gff for
BS24147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde8-RE | 521..3232 | 17..2728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:53 Download gff for
BS24147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde8-RE | 521..3232 | 17..2728 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:53 Download gff for
BS24147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23677405..23677653 | 1691..1939 | 100 | -> | Plus |
| 2R | 23677715..23677937 | 1940..2162 | 100 | -> | Plus |
| 2R | 23674286..23674342 | 482..538 | 100 | -> | Plus |
| 2R | 23674414..23674619 | 539..744 | 100 | -> | Plus |
| 2R | 23674804..23674863 | 745..804 | 100 | -> | Plus |
| 2R | 23674931..23674985 | 805..859 | 100 | -> | Plus |
| 2R | 23678002..23678159 | 2163..2320 | 100 | -> | Plus |
| 2R | 23675107..23675205 | 860..958 | 100 | -> | Plus |
| 2R | 23675355..23675465 | 959..1069 | 100 | -> | Plus |
| 2R | 23675539..23675708 | 1070..1239 | 100 | -> | Plus |
| 2R | 23675778..23675988 | 1240..1450 | 100 | -> | Plus |
| 2R | 23677048..23677188 | 1451..1591 | 100 | -> | Plus |
| 2R | 23677249..23677347 | 1592..1690 | 100 | -> | Plus |
| 2R | 23665621..23665887 | 17..283 | 100 | -> | Plus |
| 2R | 23665951..23666035 | 284..368 | 100 | -> | Plus |
| 2R | 23671976..23672088 | 369..481 | 100 | -> | Plus |
| 2R | 23678218..23678488 | 2321..2591 | 100 | -> | Plus |
| 2R | 23678547..23678683 | 2592..2728 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:51:56 Download gff for
BS24147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19553144..19553410 | 17..283 | 100 | -> | Plus |
| arm_2R | 19553474..19553558 | 284..368 | 100 | -> | Plus |
| arm_2R | 19559499..19559611 | 369..481 | 100 | -> | Plus |
| arm_2R | 19561809..19561865 | 482..538 | 100 | -> | Plus |
| arm_2R | 19561937..19562142 | 539..744 | 100 | -> | Plus |
| arm_2R | 19562327..19562386 | 745..804 | 100 | -> | Plus |
| arm_2R | 19562454..19562508 | 805..859 | 100 | -> | Plus |
| arm_2R | 19562630..19562728 | 860..958 | 100 | -> | Plus |
| arm_2R | 19562878..19562988 | 959..1069 | 100 | -> | Plus |
| arm_2R | 19563062..19563231 | 1070..1239 | 100 | -> | Plus |
| arm_2R | 19563301..19563511 | 1240..1450 | 100 | -> | Plus |
| arm_2R | 19564571..19564711 | 1451..1591 | 100 | -> | Plus |
| arm_2R | 19564772..19564870 | 1592..1690 | 100 | -> | Plus |
| arm_2R | 19564928..19565176 | 1691..1939 | 100 | -> | Plus |
| arm_2R | 19565238..19565460 | 1940..2162 | 100 | -> | Plus |
| arm_2R | 19565525..19565682 | 2163..2320 | 100 | -> | Plus |
| arm_2R | 19565741..19566011 | 2321..2591 | 100 | -> | Plus |
| arm_2R | 19566070..19566206 | 2592..2728 | 100 | | Plus |
BS24147.pep Sequence
Translation from 16 to 2733
> BS24147.pep
MGCSPSTLPPAPSAGQTGERGSLPLDASEKDESRLFCIKLRRSRLRRCSC
GGVTLQPPSDGNGSTAGDNLCGQVLLNPLQTKSEADYEKLSTGKKDSIVT
VAALGNFTHSVVRRATGSTGTSGTSSSGGNSRPGHRKSSLALALTPEDEP
MDVYQRNLMDLKYPTVLPPNPPLKALLVFHKSDSICEAITAACQRHQLDV
TLVKSKEEALDTLQKSYATAQCYHLIIIDARSSKNLDAEHIARTIRHTHG
HHLTTIIAVCKKSFFEKDDVLIALLDAGVNRCVAETTNLAMCSVELKQIL
HSIIRPHNVMSTQQALYTALHRLKEVVLITDDLLRIQYANRATERLLNMR
LDEIISKQLEDIFVSDLSTISEQCKNIKEFDGILTVRRKSQEGIPMHVRV
VPVACIGSAPTHLIFNFDVPGGQMDFIATLPQPKEAPRGSLHSVRRCSFD
VRSIASDGLRRTSLAKLTSLPLEAPITKENCSADEARLIDKVLEFLKREG
LYSPQMKEIRTDDPIATDLIGALLTGPSVYSSRRSSNDSIIRTGSSTRTA
AIVPAKMKSNPIIMELLDESLSWDFDIFKLEEITDYHPLLYLGMEMFRRF
DVFATLNIDENVCKAWLAVIEAHYRKSNTYHNSTHAADVMQATGAFITQL
TNKDMLVMDRMEEATALIAAAAHDVDHPGRSSAFLCNSNDALAVLYNDLT
VLENHHAAITFKLTLGDDKINIFKNLDKETYKSARSTIIDMILATEMTRH
FEHLAKFVSVFGGEEPRDHNPQTDEETSILMRRMLIKVADVSNPARPMQF
CIEWARRIAEEYFMQTDEEKQRHLPIVMPMFDRATCSIPKSQIGFIEYII
QDMMHAWESFIDMPQLITYMQINYSQWKKYDEQGVNTLAEIMAKQPPVGK
MANSK*
BS24147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde8-PE | 905 | CG45019-PE | 1..905 | 1..905 | 4659 | 100 | Plus |
| Pde8-PK | 914 | CG45019-PK | 1..914 | 1..905 | 4639 | 99 | Plus |
| Pde8-PI | 914 | CG45019-PI | 1..914 | 1..905 | 4639 | 99 | Plus |
| Pde8-PN | 949 | CG45019-PN | 1..914 | 1..905 | 4639 | 99 | Plus |
| Pde8-PA | 914 | CG45019-PA | 1..914 | 1..905 | 4639 | 99 | Plus |
