BS24149.complete Sequence
2522 bp assembled on 2011-03-14
GenBank Submission: KX806303
> BS24149.complete
GAAGTTATCAGTCGACATGTTTGAGCCCTATGTGAAAATCAAGAAAAAGC
GAAGTGTGAATGAAATCTATGAAAATGAGAATTTAGAGCAACAGCAACAT
CATCTTCAGCAGCAGCAGCAGCAACCTGCTACCAGCGATAATTGTTGCTG
CGAGAACGGCGAGCCTCAGAATGCGCCTGAAGTTGCAACTGCAACGGTAG
CGGCAACATCTGTGGCAGCAACATCTGCGGCAGCAACAGTCGCCACAGGA
GCAGCGGCCAGCAGTAGCAGCAGCGGCAATTGCAGTCGCCTGCAGCAATT
GATATCGACGCCACCAGTATTATTGCGCAGATCGTCGCTGCAACAGCAGC
AGCACCAGCAACAGCAACACCACCCACACACGCCAGCAGCAACGGCAACA
CCACCGCAACAGCAGCAACAGCAGCAAGCTGCGCCTTCGGTTTTGCAACA
GCATTTGGGTCACCTGAATTACGAAAGTGGAGCAACTGCAGCAGCAGCAG
CAACAGCAGCGGCTGCAGCAGCAACAGTAGCAACCAGTAGAAGTGGCTCG
GCAACACTGGCGCAGCATTTGGCAACACCCAGCAACATACTGCAGGCGGC
ATTCGGCAGCAGCAACTTGCAACACATACTAACGCGGTCCGCCCCCTCGC
CCTCGTCCAGTGCGATTTCCTCCAACAACTGCAGCAGCGCCTGTGCGGGC
AATACGCACTACAACGGTGGCAATAGCAACAGTGGCAGTAGCAGCAGCAA
CAGCAATCACCACAGCAACAGCATCATCGCCAGCCGCCTGTTCGGAGCCG
CCTCCTCCTCATCCTCCTCGTCCTCCTCCTCCGCATCAGCATCCTCCTCG
TCGGTGGCTGCCTCATCCTCTTCGTCGTCACACCATCTGCATAGCCATCA
TTCGGCGCTGACCAACTCCATAACGAATCGCATCAATCAGTCCATCAGGC
GGCATCTGAACCAGCAGCAACATCACCATCCCCTCAGTGCATCCTCGTCC
TCCGCATCGGCATCTCCATCTGCATCCACATCATCATCATCCTCCTATCA
GCAATCGTCGGTACAACAGCAACATTATAATTGCGCCCATCCTGCACAGC
AGCAGCAGCACCACCACCATCACCACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCCATCATCACCACAACAGCAGCAGCAGCAGCAACAG
CAACAATCAACAGCAACCACAACAATCTCCTCTGTGCCTAGTATTATTAG
TTAAATGCCCCAATTCTAAGGAATTTTGTAACGCCGCCGCAAATTTCTGT
GATAAAAGATTGCCGGTGAACGAATGTCAGGCAAGCCAAACAGCTAGAGT
CACCTCGAACCTGCACGCATCCAGTAGCACGATGGCGGTCAGCCGTGTAC
CATCGCCGCCCTTGCCGGAAGTTAATACGCCAGTTGCCGAGAACTGGTGC
TACACGCAGGTCAAAGTGGTTAAATTTAGTTATATGTGGACCATAAATAA
CTTTAGTTTTTGTCGGGAAGAAATGGGTGAGGTACTCAAATCGTCCACAT
TCTCAGCCGGTGCTAATGACAAACTAAAATGGTGTTTACGGGTTAACCCC
AAGGGTCTCGACGAGGAGAGCAAGGATTACCTTTCTTTATATTTACTGTT
AGTTTCGTGTAATAAATCAGAAGTCAGAGCCAAGTTCAAATTTTCCATAC
TGAATGCGAAGCGTGAGGAAACCAAAGCAATGGAATCCCAAAGAGCTTAT
CGTTTTGTGCAGGGCAAAGATTGGGGCTTCAAGAAGTTCATCCGACGAGA
CTTCCTGCTGGACGAGGCCAACGGCCTGCTGCCGGAGGATAAGCTGACCA
TCTTCTGCGAGGTCAGCGTCGTGGCGGACAGCGTGAACATCTCCGGACAA
TCCAATATCGTGCAGTTCAAAGTGCCCGAATGCAAGCTGTCCGAGGATCT
TGGCAATCTATTTGACAACGAGAAGTTCAGCGACGTCACGCTCTCCGTGG
GCGGTCGAGAGTTCCAGGCGCACAAGGCCATATTGGCAGCGCGCAGCGAT
GTCTTTGCGGCCATGTTCGAGCATGAGATGGAGGAGCGAAAGTTGAATCG
TGTCGCCATAACCGATGTGGATCATGAGGTTCTTAAAGAAATGCTGCGAT
TCATATACACGGGCAAGGCGCCCAATCTAGAAAAAATGGCTGATGATCTC
CTAGCGGCTGCTGATAAGTATGCACTCGAAAAGCTGAAAGTGATGTGCGA
GGAGGCGCTGTGCGTCAATCTCTCTGTAGAAACAGCAGCCGAAACCCTAA
TATTAGCTGATCTCCACAGTGCGGATCAATTGAAAGCACAAACGATAGAT
TTCATAAATACTCATGCCACCGATGTGATGGAAACCTCCGGCTGGCAAAA
TATGATCACAACACATTCACATTTGATAGCGGAGGCATTTCGTGCGCTCG
CAACACAACAAATCCCACCAATTGGACCACCAAGGAAACGCGTGAAAATG
AGCTGAAAGCTTTCTAGACCAT
BS24149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdx-RE | 2490 | CG12537-PE | 1..2490 | 17..2506 | 12450 | 100 | Plus |
| rdx-RF | 1221 | CG12537-PF | 21..1221 | 1306..2506 | 6005 | 100 | Plus |
| rdx-RA | 1221 | CG12537-PA | 21..1221 | 1306..2506 | 6005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdx-RE | 4159 | CG12537-RE | 439..2930 | 17..2508 | 12460 | 100 | Plus |
| rdx-RF | 3856 | CG12537-RF | 531..1733 | 1306..2508 | 6015 | 100 | Plus |
| rdx-RB | 2311 | CG12537-RB | 550..1752 | 1306..2508 | 6015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13981634..13982925 | 1308..17 | 6460 | 100 | Minus |
| 3R | 32079331 | 3R | 13969909..13970206 | 2039..1742 | 1490 | 100 | Minus |
| 3R | 32079331 | 3R | 13969608..13969790 | 2218..2036 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 13970278..13970440 | 1743..1581 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 13970950..13971104 | 1461..1307 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 13969184..13969330 | 2508..2362 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 13969397..13969541 | 2361..2217 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 13970505..13970634 | 1584..1455 | 650 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2257..2895 | 146..790 | 470 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2999 | 87..771 | 458 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2869 | 676..1224 | 403 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2636 | 272..637 | 364 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6888 | 1097..1224 | 358 | 78.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6909 | 1002..1224 | 355 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2831 | 85..543 | 345 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6951 | 960..1202 | 343 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2254..2829 | 193..787 | 318 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..7197 | 87..542 | 316 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2266..2824 | 674..1224 | 308 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2874 | 673..1217 | 304 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2666 | 389..768 | 287 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2981 | 521..1225 | 284 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2945 | 673..1231 | 283 | 54.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..3034 | 481..1199 | 280 | 54 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..7020 | 953..1233 | 277 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6410..6824 | 356..784 | 247 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..7094 | 87..431 | 237 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7217 | 723..1234 | 236 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2568..2941 | 53..429 | 230 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7274 | 702..1252 | 214 | 53.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6946 | 87..260 | 208 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6535..6959 | 380..790 | 195 | 57.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1151 | 676..784 | 183 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6880 | 673..789 | 171 | 60.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1163 | 669..778 | 171 | 64 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11595..11722 | 223..354 | 171 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6893 | 673..784 | 169 | 67 | Plus |
| TART-A | 13424 | TART-A 13424bp | 417..544 | 223..354 | 162 | 65.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1165 | 651..768 | 161 | 64.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3350 | 133..248 | 157 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6882..7209 | 87..422 | 156 | 56.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1133 | 709..787 | 152 | 65.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3290..3346 | 735..788 | 152 | 77.2 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 503..573 | 714..784 | 148 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2259..2673 | 693..1138 | 140 | 54.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1584 | 700..787 | 139 | 66.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1042..1121 | 708..787 | 139 | 68.7 | Plus |
| invader1 | 4032 | invader1 INVADER 4032bp | 2149..2196 | 2376..2423 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6872 | 72..136 | 129 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1587 | 721..778 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1587 | 708..769 | 121 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1599 | 709..773 | 115 | 66.2 | Plus |
BS24149.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-14 17:04:02 Download gff for
BS24149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RE | 443..2925 | 23..2505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:20 Download gff for
BS24149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RE | 445..2927 | 23..2505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:39 Download gff for
BS24149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdx-RE | 445..2927 | 23..2505 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:39 Download gff for
BS24149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13969187..13969330 | 2362..2505 | 100 | <- | Minus |
| 3R | 13969397..13969539 | 2219..2361 | 100 | <- | Minus |
| 3R | 13969608..13969786 | 2040..2218 | 100 | <- | Minus |
| 3R | 13969909..13970204 | 1744..2039 | 100 | <- | Minus |
| 3R | 13970278..13970439 | 1582..1743 | 100 | <- | Minus |
| 3R | 13970508..13970629 | 1460..1581 | 100 | <- | Minus |
| 3R | 13970952..13971102 | 1309..1459 | 100 | <- | Minus |
| 3R | 13981634..13982919 | 23..1308 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:20 Download gff for
BS24149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9794909..9795052 | 2362..2505 | 100 | <- | Minus |
| arm_3R | 9795119..9795261 | 2219..2361 | 100 | <- | Minus |
| arm_3R | 9795330..9795508 | 2040..2218 | 100 | <- | Minus |
| arm_3R | 9795631..9795926 | 1744..2039 | 100 | <- | Minus |
| arm_3R | 9796000..9796161 | 1582..1743 | 100 | <- | Minus |
| arm_3R | 9796230..9796351 | 1460..1581 | 100 | <- | Minus |
| arm_3R | 9796674..9796824 | 1309..1459 | 100 | <- | Minus |
| arm_3R | 9807356..9808641 | 23..1308 | 100 | | Minus |
BS24149.pep Sequence
Translation from 16 to 2505
> BS24149.pep
MFEPYVKIKKKRSVNEIYENENLEQQQHHLQQQQQQPATSDNCCCENGEP
QNAPEVATATVAATSVAATSAAATVATGAAASSSSSGNCSRLQQLISTPP
VLLRRSSLQQQQHQQQQHHPHTPAATATPPQQQQQQQAAPSVLQQHLGHL
NYESGATAAAAATAAAAAATVATSRSGSATLAQHLATPSNILQAAFGSSN
LQHILTRSAPSPSSSAISSNNCSSACAGNTHYNGGNSNSGSSSSNSNHHS
NSIIASRLFGAASSSSSSSSSSASASSSSVAASSSSSSHHLHSHHSALTN
SITNRINQSIRRHLNQQQHHHPLSASSSSASASPSASTSSSSSYQQSSVQ
QQHYNCAHPAQQQQHHHHHHSSSSSSSSSSSSSHHHHNSSSSSNSNNQQQ
PQQSPLCLVLLVKCPNSKEFCNAAANFCDKRLPVNECQASQTARVTSNLH
ASSSTMAVSRVPSPPLPEVNTPVAENWCYTQVKVVKFSYMWTINNFSFCR
EEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNK
SEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE
ANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFD
NEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITD
VDHEVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCV
NLSVETAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMITTH
SHLIAEAFRALATQQIPPIGPPRKRVKMS*
BS24149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdx-PE | 829 | CG12537-PE | 1..829 | 1..829 | 4236 | 100 | Plus |
| rdx-PF | 406 | CG12537-PF | 6..406 | 429..829 | 2048 | 99.5 | Plus |
| rdx-PA | 406 | CG12537-PA | 6..406 | 429..829 | 2048 | 99.5 | Plus |
| rdx-PC | 403 | CG12537-PC | 5..403 | 431..829 | 2047 | 100 | Plus |
| rdx-PB | 374 | CG12537-PB | 1..374 | 456..829 | 1923 | 100 | Plus |
