Clone BS24153 Report

Search the DGRC for BS24153

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:241
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptMED21-RA
Protein status:BS24153.pep: full length peptide match
Sequenced Size:461

Clone Sequence Records

BS24153.complete Sequence

461 bp assembled on 2011-01-28

GenBank Submission: KX802548

> BS24153.complete
GAAGTTATCAGTCGACATGGCGGATCGGCTTACACAATTGCAAGACACCG
TTAATCAGCAAGCGGAGCACTTCTGCAATGCTATTGGTGTAATTCAACAA
ACGTCCCTTCCAAGTAAATTTGTTAATTTTGAACGCATTGGACCCCAAAC
GCCAATCCCATGTCCGCCGCAAGAAGACTATGCCCAATTATTTGCACAGT
TAATTGCACGATGTGCTAAAGACATCGACACCTTAATCGAGTCTCTTCCA
AATGAAGACAGCTCCATTGAACTCCAAAATTCTAGCCTTAAGAGGCTCGA
GATCGAAAACCAGGGAACTGCAAGAGACCTAGAGGAAGTAGTGCAAAAAG
GCGAACTTTTGCTAGAAAAAATGCAGTATTCTTTGGAATGCATTGCTCAG
GCTCAATTAGATATGCAAATAACACTCAAACATGATTTACAATAGAAGCT
TTCTAGACCAT

BS24153.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
MED21-RA 429 CG17397-PA 1..429 17..445 2145 100 Plus
MED21-RB 429 CG17397-PB 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
MED21-RA 859 CG17397-RA 136..564 17..445 2145 100 Plus
MED21-RB 863 CG17397-RB 140..568 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 25115219..25115608 445..56 1950 100 Minus
3L 28110227 3L 25115662..25115703 58..17 210 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:45:54 has no hits.

BS24153.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:20 Download gff for BS24153.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RB 160..588 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:12 Download gff for BS24153.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RB 140..568 17..445 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:58 Download gff for BS24153.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RB 140..568 17..445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:58 Download gff for BS24153.complete
Subject Subject Range Query Range Percent Splice Strand
3L 25115219..25115605 59..445 100 <- Minus
3L 25115662..25115703 17..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:12 Download gff for BS24153.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 600675..601061 59..445 100 <- Minus
3LHet 601118..601159 17..58 100   Minus

BS24153.pep Sequence

Translation from 16 to 444

> BS24153.pep
MADRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPIPCP
PQEDYAQLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQG
TARDLEEVVQKGELLLEKMQYSLECIAQAQLDMQITLKHDLQ*

BS24153.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
MED21-PA 142 CG17397-PA 1..142 1..142 721 100 Plus
MED21-PB 142 CG17397-PB 1..142 1..142 721 100 Plus