BS24158.complete Sequence
1445 bp assembled on 2011-01-28
GenBank Submission: KX800541
> BS24158.complete
GAAGTTATCAGTCGACATGCAGCAGAAAGTCGAAGAGAAAATCGATCCCC
TGACACGCATTCAGGAGGAGATCAAGGAGGTAGTGCGGCGCGAGGAGGAG
TACCGCCAGCTGGCCACACTGTCGTCCAGCGCCTCGATCACTTCCGCTTC
GCCGGATTTCGAGACATACACGGTTAATAGTAACTTTGAGCCGAAACTGC
AGCAGGATGATGAGCACGATCTGGTCGAAAGTCCAGATCAGGACCAGGGC
ATGCTCGTTACCGCCCAGCCGGCGGCCGTGCAGACCACCTCGCTCCTGCT
GCCCATCGACGAGCTGTCCAACACACCATCGCTGGCCTCCAGTGTGAATA
GCGCCAAGGAGGAGAGCCTCGATGGCCAGCACTCGGATGATTCGGGCATT
TCGGCCTCCTCGCAGAGCAACATCCTCATCACTGGGATCACCACGAATGT
GGCCAAGCAGCAGCCACTCAAACTGACCGTGGTGACGCGTCAGGAGCAGC
GTTACATTGGGCCCAACTGCTATAATCTGACACCTGAACCGCCACAGCAG
AAGCTGATCACCCGCACCATATCCACGCCCCAGCTGAGTGGTCTGCCCCA
GAAGCGGCAGTTTGCCTTCGGTGGCGCCACCAAGGGTGTGATGCAGCGCT
TCATTGCCTCGCATGGCAAGTTGGGCAACACTAGCCCGCTGCCGGCTGCA
TCTCCAATGACGTTGTCCCTGGGCGCCGCCAATGGTAATGGCGGCCTAAA
TGTCAATGGCCAGATCAACAATATCAGCAGCAGCAACAATAACAACAACA
ACAACAACAACACCCTCAAGCTGAACACTCGCACAGCCATGGCTTTCCTG
GAGTCTGGAGGTTCCACGGGCGGCATCAACTCGTCATCGGCGGCCCTATC
GTCGGCGGCTATCGAACGCGACTCGGAAGGCAGGCCCCTGCGACGAGGAT
ATGTCCCCGTTGAGCAGAAGATTCAGCGTGAGCTGCAGGATCTGAAGTCA
CGCGAATCGGAATTGAAGCGTCTGCGCAAGATCAACAGGCAGAACACACT
GAAGGCCTCCCTGGACAAGCTGCAACTCAGCACAGATGATGAGGCCGATG
CAGATGATGATGATGAGGACTCCGAGGTGGAGCACTGCTATGGGCCCGGA
AAACTGCGCAATGCCCAGTCCACACAGGAACTTGATAGGAATGGAAACGA
GCAGGACATCGTTCACAAGCCATCGGGTAATCGCAGTCTGAACGCAACCG
CCTATATAGCCAATGGAATCAGCAATGGCAATGGCAACGGCATGCGTCCG
GCGATGTCGCTGGCCCAGCTCTGCGATCTGACGCCGGAGGAGGCGCCCTC
ATCGCGTGGACTCATCGCCCAGTGGGAGAATCTGATCAAGAAGAACGCCG
AGGTGGGAACGGTCGAGGCGATCATCTAAAAGCTTTCTAGACCAT
BS24158.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2556-RA | 1413 | CG2556-PA | 1..1413 | 17..1429 | 7065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2556-RA | 2304 | CG2556-RA | 386..1799 | 17..1430 | 7070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12514482..12515518 | 36..1072 | 5185 | 100 | Plus |
| X | 23542271 | X | 12515824..12516060 | 1194..1430 | 1185 | 100 | Plus |
| X | 23542271 | X | 12515645..12515767 | 1072..1194 | 615 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2497 | 755..818 | 187 | 78.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2483..2535 | 759..811 | 157 | 77.4 | Plus |
BS24158.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:19 Download gff for
BS24158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2556-RA | 413..1823 | 17..1427 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:56 Download gff for
BS24158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2556-RA | 386..1796 | 17..1427 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:39 Download gff for
BS24158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2556-RA | 386..1796 | 17..1427 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:39 Download gff for
BS24158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12497573..12497593 | 17..37 | 100 | -> | Plus |
| X | 12514484..12515517 | 38..1071 | 100 | -> | Plus |
| X | 12515645..12515767 | 1072..1194 | 100 | -> | Plus |
| X | 12515825..12516057 | 1195..1427 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:56 Download gff for
BS24158.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12391606..12391626 | 17..37 | 100 | -> | Plus |
| arm_X | 12408517..12409550 | 38..1071 | 100 | -> | Plus |
| arm_X | 12409678..12409800 | 1072..1194 | 100 | -> | Plus |
| arm_X | 12409858..12410090 | 1195..1427 | 100 | | Plus |
BS24158.pep Sequence
Translation from 16 to 1428
> BS24158.pep
MQQKVEEKIDPLTRIQEEIKEVVRREEEYRQLATLSSSASITSASPDFET
YTVNSNFEPKLQQDDEHDLVESPDQDQGMLVTAQPAAVQTTSLLLPIDEL
SNTPSLASSVNSAKEESLDGQHSDDSGISASSQSNILITGITTNVAKQQP
LKLTVVTRQEQRYIGPNCYNLTPEPPQQKLITRTISTPQLSGLPQKRQFA
FGGATKGVMQRFIASHGKLGNTSPLPAASPMTLSLGAANGNGGLNVNGQI
NNISSSNNNNNNNNNTLKLNTRTAMAFLESGGSTGGINSSSAALSSAAIE
RDSEGRPLRRGYVPVEQKIQRELQDLKSRESELKRLRKINRQNTLKASLD
KLQLSTDDEADADDDDEDSEVEHCYGPGKLRNAQSTQELDRNGNEQDIVH
KPSGNRSLNATAYIANGISNGNGNGMRPAMSLAQLCDLTPEEAPSSRGLI
AQWENLIKKNAEVGTVEAII*
BS24158.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2556-PA | 470 | CG2556-PA | 1..470 | 1..470 | 2371 | 100 | Plus |
