BS24160.complete Sequence
1532 bp assembled on 2011-02-03
GenBank Submission: KX802441
> BS24160.complete
GAAGTTATCAGTCGACATGGGAATCGGAATGCTTGATTCCGAAGAAAGCA
GCTCCTCAGCCCTCTCGGCCATCGCTTTGGCGGTTAGCGCCACCAGCGAC
GACAACTCAAATGAGACGACCCCGTGCGCCAGTGTGTCGCGCATGGCGCA
CCAGCTACAGCACACGCAACGGCTAAGTCTGGGCTCTACGGGGGACATCA
CACTGGATAGCCCAGCTGTGGAGGATTCACTGTCGATGTCCCGTCAATCG
GCCGAGAAGCTGCAGATTCTGGCGCAGGCTAAGCGCTCGTCGTTGGGTTC
TGAAGGTAGCGGCAATTCAAACTCGCCCAGCAAACGTTTGCGCAACCCCC
TGGCTGCAGTCACCTGTAACAACCAGATTGATGGGACTGCTTCGCTCAAT
TTTCAGCCATCAACCAGCAGGTTGGCGCAAGTTCGCCAGGCAAAAAAGCC
CTCGACAACAAATATTACAACCCGAATAGTGGCAGCGGACAGTTTCTTTG
TGTTTCGCACCCCGGCCATGAGTGCCCACATCAACAGCGGCATAAACTAC
TTTGAAAGACTTTCAGACGAAATACTACTTGACATCTTTAAGTGGCTCCC
GAAGAAGACGCTGCTGCGCATGGCTACCGTTTGTCGACGCTTTAACCGCT
GCTCTCGCGATGAGACTTTGTGGACAAGGCTAGATTTGGGTTTGCGGACA
ATTAGACCAGGTGCCCTCGAGCAAATTGTACGGCGGGGAGTCCTTGTAAT
ACGTCTGGCCCAGACTAGTATCCAGGAGCCCGCATTTGCACCATATACAG
AAGTGTTTAGGACCCGATTACAATATCTTGACCTGAGTATGGCTTCCATC
ACCCGAAGCTCACTGCTGACACTATTGTCCCACTGCCGCCAGCTAAAGAA
AATAAGCTTAGAGAATATTGAGCTCGATGATGACATCTGTGCAGAGATCG
CAAAGAATGAAGCTTTGGAGGCGGTCAATCTGACTATGGCTAGTGGCCTG
ACGTCCAACAGTGTTCGCCTGATGATGGAGTCACTTACCAGCCTAAGCAG
CTTAAACATATCGTGGACTGACCTAAGTGCGGATGCTGTTACGGCGTTGG
TTACCCACATTTCCCCCAACTTAATTCGGCTCAATATCGCTGGCTGCCGC
CGCGTTTTGTTTGACTCGCATGTTGCAACCCTGCAAAAACGGTGTCCTCA
GTTGTTGGAGCTTGATCTATCTGATTGCAATAGTCTAACACCAACAGTCA
TTACTGCAATTATGAAGTTCAAGATGCTGGAATATTTGTCCGTCTCCCGA
TGCTATCTTATTCCAGCAACCAAATTTATTGAACTTAAGAGTATGCCCTC
GCTAACCTATTTAGACATATTTGGGATGCTGTCGGACACTGCAATGGAAG
TCCTTGAGAAACAACTGCCAAAAATGGGTATAAACAAATTCATTCACAGT
TCGGTATCCCGCCCGACTGTTGGCACGCGACGCACCTCCATTTGGGGTCT
GCGCACGCGCGACTAAAAGCTTTCTAGACCAT
BS24160.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1680 | CG9772-PE | 181..1680 | 17..1516 | 7500 | 100 | Plus |
| Skp2-RA | 1680 | CG9772-PA | 181..1680 | 17..1516 | 7500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 249..1748 | 17..1516 | 7500 | 100 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 249..1748 | 17..1516 | 7500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336469..4337221 | 769..17 | 3765 | 100 | Minus |
| 3R | 32079331 | 3R | 4336009..4336408 | 1169..770 | 2000 | 100 | Minus |
| 3R | 32079331 | 3R | 4335543..4335729 | 1516..1330 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 4335786..4335945 | 1329..1170 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:00:43 has no hits.
BS24160.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:25 Download gff for
BS24160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RD | 432..1929 | 17..1514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:00 Download gff for
BS24160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RB | 321..1818 | 17..1514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:16 Download gff for
BS24160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 249..1746 | 17..1514 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:16 Download gff for
BS24160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4335545..4335729 | 1330..1514 | 100 | <- | Minus |
| 3R | 4335786..4335945 | 1170..1329 | 100 | <- | Minus |
| 3R | 4336009..4336408 | 770..1169 | 100 | <- | Minus |
| 3R | 4336469..4337221 | 17..769 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:00 Download gff for
BS24160.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 161267..161451 | 1330..1514 | 100 | <- | Minus |
| arm_3R | 161508..161667 | 1170..1329 | 100 | <- | Minus |
| arm_3R | 161731..162130 | 770..1169 | 100 | <- | Minus |
| arm_3R | 162191..162943 | 17..769 | 100 | | Minus |
BS24160.pep Sequence
Translation from 16 to 1515
> BS24160.pep
MGIGMLDSEESSSSALSAIALAVSATSDDNSNETTPCASVSRMAHQLQHT
QRLSLGSTGDITLDSPAVEDSLSMSRQSAEKLQILAQAKRSSLGSEGSGN
SNSPSKRLRNPLAAVTCNNQIDGTASLNFQPSTSRLAQVRQAKKPSTTNI
TTRIVAADSFFVFRTPAMSAHINSGINYFERLSDEILLDIFKWLPKKTLL
RMATVCRRFNRCSRDETLWTRLDLGLRTIRPGALEQIVRRGVLVIRLAQT
SIQEPAFAPYTEVFRTRLQYLDLSMASITRSSLLTLLSHCRQLKKISLEN
IELDDDICAEIAKNEALEAVNLTMASGLTSNSVRLMMESLTSLSSLNISW
TDLSADAVTALVTHISPNLIRLNIAGCRRVLFDSHVATLQKRCPQLLELD
LSDCNSLTPTVITAIMKFKMLEYLSVSRCYLIPATKFIELKSMPSLTYLD
IFGMLSDTAMEVLEKQLPKMGINKFIHSSVSRPTVGTRRTSIWGLRTRD*
BS24160.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-PE | 559 | CG9772-PE | 61..559 | 1..499 | 2482 | 100 | Plus |
| Skp2-PA | 559 | CG9772-PA | 61..559 | 1..499 | 2482 | 100 | Plus |
