BS24162.complete Sequence
1382 bp assembled on 2011-01-28
GenBank Submission: KX803299
> BS24162.complete
GAAGTTATCAGTCGACATGACAGAGAAAGTGACTAAACTGGCGCTGGCCA
GTCGCCTTATCGTCCTCCTGGTACAATTGGTCGCCAACGGAGCCCTGCCA
GAGCACAAACCAGATGTATTCCGGATGCCGGTTTCGTCAGATCAGAATGC
CTCCTGGATAGACAAGGTGATTAAGCGCTGCTTGGGAGGATTACGGCACT
GGGATGGAGAATACTTTCTGCATATAGCCGAGAATCTGTACAGCTACGAA
AACACGTTGGCCTTCTATCCACTATATCCGGTTGTCGTGCGTCACGTGGG
ACAGGCCGTGGAGGCCATCGGGATCTCCTTATCACAGGAATCTATCCTGC
TGGTGGTGGCTGTCGCCCTGAACTTCTGGCTCTTCTGCGAGTCAGCTAAT
TTGCTGTTTCAGCTCACCCAAGTATTGTTCAACGATTTAAACAAGAGCTG
GAATGCGGCCCTCATCTACTGCTTTAATCCGGCAACCATTTTCTTCACCG
CCGCCTACTCAGAGACCTTTTTCGCCTACTCCAGCCTTCATCTGATGCTG
GAGTGCTCGAAGCCGACGGGTAGCTTCCGATATCTGCGTTTGGGAACCGC
CTTAGCCGCCTGTTTACTGTGCCGCTCAAATGGATTAATCACCTTGGGAT
ACCCGCTCTACTTCTTCGGACGCCAACTGCTACTCAAGAACAAGGAGCCC
AACACCTGCATGCAGCTGACACAAATGACGCTGACCATTCTGGGAGCCAT
TGGGATACTGCACACCTACTATTTCTACATATACAGGCTATACTGTCTGC
CGAACACAAGGCCAAACCATCCGCAGCACATTGTGGACTACGCAGTGGAA
CGGAAGTACCTATTGTCTGGCCAGGGCTCTGAAGGATCACCTTGGTGCCA
GTACACGTTGCCGTTCCCCTACACTTACGTGCAGTCGCACTACTGGGATG
TGGGCTTCCTGCGATACTACAAGTGGAAACAGCTGCCCAACTTCTTGCTG
GCCCTGCCCATGCTGAGTTTCATGCACTGGCACTGCTACGACTACATGCA
GCATTTGGCCAAAGCGGTCTGGGCCAAATTGACGCCCTCTGGCTTCAAGG
AGCTGATAAGGGACCACACCACATTCCCTTTCGTGCTGCACGCTGCGATT
CTCACCCTTGTCTGCACCGTCTACGTGCACATCCAAGTGTCCACACGCCT
CCTGGCCTCGGCCACACCTGTTTTCTACTGGTTTGCCGCTGACCACATGC
CCAAGACACTGGCCCAACTAAAACTGCGTTCGAAGGCAGGAGCTCTCTTT
GTATGGTGCACCACTTATAGTTTGGTGGGCACGGTGCTATTCAGTAATAA
TTACCCGTGGACGTGAAAGCTTTCTAGACCAT
BS24162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-V-RC | 1350 | CG44239-PC | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| PIG-V-RB | 1350 | CG44239-PB | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| PIG-V-RA | 1350 | CG44239-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-V-RC | 1780 | CG44239-RC | 225..1574 | 17..1366 | 6750 | 100 | Plus |
| PIG-V-RB | 1851 | CG44239-RB | 296..1645 | 17..1366 | 6750 | 100 | Plus |
| PIG-V-RA | 1791 | CG44239-RA | 236..1585 | 17..1366 | 6750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16955753..16957102 | 17..1366 | 6750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:47:06 has no hits.
BS24162.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:22 Download gff for
BS24162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veg-RB | 290..1638 | 17..1365 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:38 Download gff for
BS24162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-V-RA | 236..1584 | 17..1365 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:23 Download gff for
BS24162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-V-RA | 236..1584 | 17..1365 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:23 Download gff for
BS24162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16955753..16957101 | 17..1365 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:38 Download gff for
BS24162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12843258..12844606 | 17..1365 | 100 | | Plus |
BS24162.pep Sequence
Translation from 16 to 1365
> BS24162.pep
MTEKVTKLALASRLIVLLVQLVANGALPEHKPDVFRMPVSSDQNASWIDK
VIKRCLGGLRHWDGEYFLHIAENLYSYENTLAFYPLYPVVVRHVGQAVEA
IGISLSQESILLVVAVALNFWLFCESANLLFQLTQVLFNDLNKSWNAALI
YCFNPATIFFTAAYSETFFAYSSLHLMLECSKPTGSFRYLRLGTALAACL
LCRSNGLITLGYPLYFFGRQLLLKNKEPNTCMQLTQMTLTILGAIGILHT
YYFYIYRLYCLPNTRPNHPQHIVDYAVERKYLLSGQGSEGSPWCQYTLPF
PYTYVQSHYWDVGFLRYYKWKQLPNFLLALPMLSFMHWHCYDYMQHLAKA
VWAKLTPSGFKELIRDHTTFPFVLHAAILTLVCTVYVHIQVSTRLLASAT
PVFYWFAADHMPKTLAQLKLRSKAGALFVWCTTYSLVGTVLFSNNYPWT*
BS24162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-V-PC | 449 | CG44239-PC | 1..449 | 1..449 | 2414 | 100 | Plus |
| PIG-V-PB | 449 | CG44239-PB | 1..449 | 1..449 | 2414 | 100 | Plus |
| PIG-V-PA | 449 | CG44239-PA | 1..449 | 1..449 | 2414 | 100 | Plus |
