BS24165.complete Sequence
2996 bp assembled on 2011-02-18
GenBank Submission: KX803506
> BS24165.complete
GAAGTTATCAGTCGACATGCACCAAAGCAAACGCTCCAGCGAAATGTGGA
ATCAATACCGAAACCAAAACCGAAACAAAAACCAAAGTCAAGGATCCAGT
GGAGTCACCCGTCGTCCAACGATGGGGCGGAACAAAGGAGCTGCCGCCGG
ATCACGAGCACTCAACTGTGGCCTGTTGATGCTCCTGCTGCTCCTCCAGC
TGGTGGGTGAGCGCCTGGCGACGCCATCGCCATCCTCCATGCAGGCGCCA
CAGAAACGAGGTGGCAGTGGCAGCGGAGGTGGAGGCGGCGGCGGAGGAGG
CGGCGGTGGAGGCGGTGGCAGTGGCAGCTCGTCGGACGTATCGAGAGATC
ACTGCAACAAGACGGTGGACATCTTCGAGGACATCAGCTCGCCGGAGGTC
AGCAACCAGAACGTGGGTCGTCCGCTGACCTGCTGGTACCGCTTCCGGAC
GCTGAAGGGAGCGCCCCGCGACTTTGTGCTGCGTCTGCGATTCAAGAAGT
TCAAAGTGGGTCAGCTGCTGAATGCAACCCACTGCGAGGGCGGCTACTTG
CAGATTGTTGATGGCAATGCCAAGACGGATGTCTCGAATCGCCGAGAGCC
CGGAATGTTTTGCGGGGAGGCGGAACAGCCGCAGACATTCATCAGCGAGA
CCAGCTATGTGAAGGTGCTCTTCCACACGGACAACTTTACGGATCAGACC
TACTTCACATTCGATTCACGCGCGGAACAGCAAACCGAAGTCTATCTGCG
ATATGGCCAACATCCGGAATTATATCCAAATCGTCGCGGCGAAGTTGTTC
AAGGCTCCTACTGCGAACGCGAGTATCGAGATTGTCGCCTGCAGACCTGT
TACGTTCAATCGCCCGCATATCCTGGCCTATATCCTCGGGCCCTGAATTG
CCGCTATAAGCTGCACACTCGCCAGCCATATATCAAATTGTATCTGCAGA
ATGAGCAGTTTGCAGTGGATGGTCAAAGGTGTGAGAATGTGATGACCTGC
CCCATCAGGCCGATCGGATCTGGTAATGAGCACTGTCCCTACGACTGGTT
GGCCGTATACGATGGACGTGATGAGCACTCGCCGCTCATTGGGAAGTTCT
GCGGCCTGGGCAAGTTCCCATTCAGCATTATTGGCACATCACAATACATG
TATGTGGAGTTTGTTACTTCGCCGGCGGGTCCGCTGCTCAATACAGGCTT
CCATTTCAACGTTGGCAACTGGCCAGGTCATGTGGAGACGGCTGGGATCA
AGCACGGCGTCTGCGACTGGCTACTGAGCTCCGATTCTTTAAAGGACAGC
AGCGCCAGCGAGGGCATCTTCCTTAGCATCGCCCACTGGTATCCGCCGAA
TACGTCCTGCAGCTACCACATCAAAGGACATGTCGGTGAAATTGTGCGCC
TTTATTTCCCCAGTTTCCGCATCAATCGAATAGAATCACCGATTTTGAAG
TACGAAGGAGACTGCGGAGAATCCCTGACGATCTACGATTCCGACCATGC
CGATCCAGCACGGATTATCAAGACCTTCTGCGACACATTCTCGCGACCAA
TGGAGAAGGTGGACTTCGTGAGCACCAGTCCCTCACTGTACGTGCAGTTC
GACTCGAAGACGGGCAGCTATAGCGGCAGCTCACTGTACTACTGGGCGCA
CTACGATTTCTTCAACAATACTCGTTTTGGTGACCCAGTGCCAAATACCC
TATGTGACGAGGTGATGTATGCCTGGAAGCATCCAGGTGGACGTCTTCGA
TCGCCCTTGAATTCACTGATTTTCAAGCGAACCGGCGGAAGCGATGTGCG
CTGTCAATACAAATTTGTTACCGATCGAAGACTCTATGCCCGAGCCATAA
TCGAAGTGAATTCTGTTTCCTTCAAGGAACTTCCGTATAATAGTAACGCG
TGCACTCGGTGTCACGAGGAGCGAGTGGATAAGCTGGTGATCTGGGAGGA
GCGGGATAAGTACCAAAATAACCTGGCCTGCTTTTGCGACAACATCCCCC
GAGCGGTTAGAGTTATATCCTCGGCAGATCAAATGAATCTGGAAATGATT
GTGCAGGGACAGCATGCCATTACCTCGTACTTCAAGAACCCGAATCCTCT
CTTCGAAGCTACTTATGAGTTTGCCCATGGTCCTTTGTGCGGTCCCATTA
CCCTCGGACCCTCGCCAGATGGCGAACTGGTATTCCCCTACAAGAAGGCC
TTGGCCATGGTATCGGGACCCATGGCACCGCCAGAGCATCATTATCGCCG
AGAGAAATGCATTTGGGAACTGAAAGTGGCCGCCCAGAGGGATCTTTGGC
TGAACTTGGAAAAAGCACGCTTTGCAGATCGCAGCTGCGATAGTGCCAAG
ATCGAGGTCTATTTGGCGGGTCGTCTGGAGCCCCGATTTGTGGTTTGCCC
CGAAAATATATCCTTAGCCAGGGATTTGCCTATCCTGACCACAGCGGAGT
TGGGAGCCACGGGTGCCGATCAGGAACCCCTGCCCGTGCTCATCCAGTAT
ACGGGGGATGGTCAACCAGGCCGAAACATTTTCCGACTGGTTTGGACGGA
ACTCTTTCACCTGCCACGCAATCCGGACGGCAGTCTGGCTGCCTCCCTCC
TTCAGGATGGCGGTTGTGATTTCCGATGTCCTGGAGACACGGAAGTCTGC
ATTCCAAAGCACTTACTATGCAATGGAATAGCAAATTGCCCAAATGTGAC
GCACACTTCGACGTTGTCGCAACTCACAAGACATATAGAATGGAATTTGG
AGCAACTGGGATTACTCCATCATGCTGGCGACTATCAGCAGTTGGTGCTG
CATGATGAATCCCCCGAGATCTGCCTGAAACGCGATCTCAGTGAGTTGCC
ATATGGAAAGTTATCCTTGATAGCCCTTGGACTGTGCCTCATGTTTGCAC
TGCTCTTCGCGATTCTAAGAAGGATGTGCAGAAGCTCGTCCTTACACCAA
GGAAGGCATCATCTGCAGGAGGATTACTAAAAGCTTTCTAGACCAT
BS24165.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34370-RH | 2859 | CG34370-PH | 1..2859 | 122..2980 | 14295 | 100 | Plus |
| CG34370-RG | 2859 | CG34370-PG | 1..2859 | 122..2980 | 14295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34370-RH | 4294 | CG34370-RH | 158..3121 | 17..2980 | 14820 | 100 | Plus |
| CG34370-RG | 4377 | CG34370-RG | 241..3204 | 17..2980 | 14820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21988241..21989821 | 2980..1400 | 7860 | 99.8 | Minus |
| 2R | 25286936 | 2R | 22004983..22005277 | 553..259 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 21994614..21994894 | 1413..1133 | 1405 | 100 | Minus |
| 2R | 25286936 | 2R | 22037390..22037635 | 262..17 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 21998799..21998975 | 980..804 | 885 | 100 | Minus |
| 2R | 25286936 | 2R | 21994954..21995111 | 1134..977 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 22004708..22004857 | 697..548 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 22000700..22000809 | 804..695 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:24:34 has no hits.
BS24165.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:42 Download gff for
BS24165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34370-RG | 240..3201 | 17..2978 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:22 Download gff for
BS24165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34370-RG | 241..3202 | 17..2978 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:33 Download gff for
BS24165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34370-RG | 241..3202 | 17..2978 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:33 Download gff for
BS24165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22037392..22037635 | 17..260 | 100 | | Minus |
| 2R | 21988243..21989807 | 1414..2978 | 100 | <- | Minus |
| 2R | 21994614..21994893 | 1134..1413 | 100 | <- | Minus |
| 2R | 21994955..21995109 | 979..1133 | 100 | <- | Minus |
| 2R | 21998801..21998974 | 805..978 | 100 | <- | Minus |
| 2R | 22000700..22000806 | 698..804 | 100 | <- | Minus |
| 2R | 22004708..22004851 | 554..697 | 100 | <- | Minus |
| 2R | 22004983..22005275 | 261..553 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:22 Download gff for
BS24165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17875748..17877312 | 1414..2978 | 100 | <- | Minus |
| arm_2R | 17882119..17882398 | 1134..1413 | 100 | <- | Minus |
| arm_2R | 17882460..17882614 | 979..1133 | 100 | <- | Minus |
| arm_2R | 17886306..17886479 | 805..978 | 100 | <- | Minus |
| arm_2R | 17888205..17888311 | 698..804 | 100 | <- | Minus |
| arm_2R | 17892213..17892356 | 554..697 | 100 | <- | Minus |
| arm_2R | 17892488..17892780 | 261..553 | 100 | <- | Minus |
| arm_2R | 17924897..17925140 | 17..260 | 100 | | Minus |
BS24165.pep Sequence
Translation from 16 to 2979
> BS24165.pep
MHQSKRSSEMWNQYRNQNRNKNQSQGSSGVTRRPTMGRNKGAAAGSRALN
CGLLMLLLLLQLVGERLATPSPSSMQAPQKRGGSGSGGGGGGGGGGGGGG
GSGSSSDVSRDHCNKTVDIFEDISSPEVSNQNVGRPLTCWYRFRTLKGAP
RDFVLRLRFKKFKVGQLLNATHCEGGYLQIVDGNAKTDVSNRREPGMFCG
EAEQPQTFISETSYVKVLFHTDNFTDQTYFTFDSRAEQQTEVYLRYGQHP
ELYPNRRGEVVQGSYCEREYRDCRLQTCYVQSPAYPGLYPRALNCRYKLH
TRQPYIKLYLQNEQFAVDGQRCENVMTCPIRPIGSGNEHCPYDWLAVYDG
RDEHSPLIGKFCGLGKFPFSIIGTSQYMYVEFVTSPAGPLLNTGFHFNVG
NWPGHVETAGIKHGVCDWLLSSDSLKDSSASEGIFLSIAHWYPPNTSCSY
HIKGHVGEIVRLYFPSFRINRIESPILKYEGDCGESLTIYDSDHADPARI
IKTFCDTFSRPMEKVDFVSTSPSLYVQFDSKTGSYSGSSLYYWAHYDFFN
NTRFGDPVPNTLCDEVMYAWKHPGGRLRSPLNSLIFKRTGGSDVRCQYKF
VTDRRLYARAIIEVNSVSFKELPYNSNACTRCHEERVDKLVIWEERDKYQ
NNLACFCDNIPRAVRVISSADQMNLEMIVQGQHAITSYFKNPNPLFEATY
EFAHGPLCGPITLGPSPDGELVFPYKKALAMVSGPMAPPEHHYRREKCIW
ELKVAAQRDLWLNLEKARFADRSCDSAKIEVYLAGRLEPRFVVCPENISL
ARDLPILTTAELGATGADQEPLPVLIQYTGDGQPGRNIFRLVWTELFHLP
RNPDGSLAASLLQDGGCDFRCPGDTEVCIPKHLLCNGIANCPNVTHTSTL
SQLTRHIEWNLEQLGLLHHAGDYQQLVLHDESPEICLKRDLSELPYGKLS
LIALGLCLMFALLFAILRRMCRSSSLHQGRHHLQEDY*
BS24165.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34370-PH | 952 | CG34370-PH | 1..952 | 36..987 | 5173 | 100 | Plus |
| CG34370-PG | 952 | CG34370-PG | 1..952 | 36..987 | 5173 | 100 | Plus |
| CG32206-PB | 1260 | CG32206-PB | 172..490 | 173..476 | 292 | 27.5 | Plus |
| CG32206-PE | 1278 | CG32206-PE | 172..490 | 173..476 | 292 | 27.5 | Plus |
| CG42613-PG | 1051 | CG42613-PG | 278..1001 | 134..914 | 221 | 22.3 | Plus |
