BS24166.complete Sequence
2012 bp assembled on 2011-02-16
GenBank Submission: KX802438
> BS24166.complete
GAAGTTATCAGTCGACATGACAATCAAGCCAGTGAGCGCCCCACCGAGCG
CGAAACGCGTGGCTGGAAATGTGGATCCCGATAACAAGGAGGCGCAGGTG
GTTGTGGTGGAGCAGTCGGTGGTCAGCCAGACCCATAACCATGCCCACAA
CCACCGTAACGTCGTCATCGATGGGCAGAGCCCCCAAAGGCGTGGCGAGG
TCTACGACGAACTGGCACGCACCCATCGCTGCAGCCCACACAAGAGCACA
CGCTCGAAGCGTCGCGAACACCACGAAGCGCATGCACACCTTTATAAGCG
CGATCGTCTGGAGCGCGAGAAACTAGTCCATCCGACGGCAGCGGCGGGCA
GTGGAGCACCTGGTGTATCTGGCAGCAAGTGCAACAGTCCACCGTCGACC
TCAACTTCCGGCAGTAGCAGTCCGTCGGCAGTGGGCCGAAACTCACCCGA
ACACTTGGGACTGGGCTGCACCACGGTGCCCACAGCTCAGGTCCAGATGT
CTACGTCTACGGCGGCCGCCAATTTGCTAAAAACAGTGGAGGAAACCTTT
TCCGGTTACAATAGCGGCGATGAGCATCATCAGCCCAAAGAGCGATTGAT
TCCAGTGGAAGAGTGGCAGCGACGTGATCTGGAGTTCGCCAAATGTATGG
AACAGCGCGGCTACGAACTTAAGCCTGTCGAGGAGGATGGCGCCTGCCTG
TTTCGCTCTATATCCCTTCAAATATACGGCGACGAGGAGATGCACGACGT
GATCCGCCAACACACTATGGATTATATACACGAGAATCGGGAATATTTCG
GTCAGTTTGTCACCGAGGACATCAACAGCTATATACAGCGTAAACGGGCT
CGTGATGCTCATGGCAACCACATTGAGATCCAAGCTATTTCCGAGATCTA
CAGCCGTACCGTCGAGGTATACTGCTACCAGTCAAATCCCATCAATATAT
TTAACTCGGAACAGTCGCAGGCGGGTTATCCCCCGCTGCGTTTATCCTAT
CAGCGCGGATCACACTACAATGCTATTCTGGATCCCTACAACGCCACCGT
TGGCGTGGGCCTGGGCTTGGCTGGATACAAGCCCGAGATCCAAACCAAAG
AGGCTGTGCGTCTCAGCGAGCAGTTGGAGATCGAACAGACCATGTTTGAA
GATAAACTAAAGACAACAGACTGGGAGGCCACTAACGAAGCCATTGAGGA
GCAAATTGCTCGCGAGTCTTACCTACAGTGGTGTCGCGAGAATACGCAAC
GCTCGCGCAACAGCAATACAGCGGCAGGATCGGCCACATCCTCGACGGTT
ACCTCTGCAGAAGCGCTTACCGACTCCGATGCCTCGCCCTCAAAATACTC
TGCGTGTGGGGGCACTGGCAGCAGCGGTAATCCACCTGTGGCTTTGACCA
GCGGTAGTGGTGGTGATGGCGCCGGACCCGCATTTTCGCTGTCGCCCAAA
ACACTTAACCAGTTTAGTCACAAGCTACCGCAAGAGGTTAACGAGCTGGG
TGGCTACGATAGCGATGCAACAGACATGAGTAGCACCAGCTCGGTGGGAC
ACAGCGGTGGCAGTTCATCGCCGAGCACAGCTGCAAGCCAACGTTCGGGC
AAGGGATCCAAGTCTCAACGTCGCGCTACGGCCCTCAGAAAGAAGCGACG
ACACGAAACTCGCGAGACGACTTTGGCTAGCAAGAGCGCCGAGGCTTTAG
AGGCTCCGCTGAGGAAGAGTCCAAAGCGCGATTCAGCGCCATCAGTGGCA
CGAGCTGACACGCCAGAGGCTGAGCAGCGTCCCTCCACCTCGAAGCAGTC
GTCTCATTCGCCACAGAAGAACGTGGATAGCAAGTCACCTACGGAGCAGA
GTTACTCTAGCTTTTATCAGGAGCTGCTCGAGGCATCCTACGCCAATGAA
GGCGCTAACGAAAGCGAGATGCTGCAGCAAGCCATCCAGATGTCCACACG
CGATTACATGGAGGACCAAAAACGAAAGTTTCTCTTCGGACCGTAGAAGC
TTTCTAGACCAT
BS24166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6091-RF | 1980 | CG6091-PF | 1..1980 | 17..1996 | 9900 | 100 | Plus |
| CG6091-RE | 1980 | CG6091-PE | 1..1980 | 17..1996 | 9900 | 100 | Plus |
| CG6091-RG | 1707 | CG6091-PG | 1..1670 | 17..1686 | 8350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6091-RF | 3179 | CG6091-RF | 530..2512 | 15..1997 | 9915 | 100 | Plus |
| CG6091-RE | 3276 | CG6091-RE | 627..2609 | 15..1997 | 9915 | 100 | Plus |
| CG6091-RD | 2167 | CG6091-RD | 101..1853 | 245..1997 | 8765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11606536..11607085 | 1686..1137 | 2750 | 100 | Minus |
| 3L | 28110227 | 3L | 11607652..11608185 | 778..245 | 2670 | 100 | Minus |
| 3L | 28110227 | 3L | 11606256..11606473 | 1902..1685 | 1090 | 100 | Minus |
| 3L | 28110227 | 3L | 11607144..11607346 | 1138..936 | 1015 | 100 | Minus |
| 3L | 28110227 | 3L | 11608676..11608839 | 178..15 | 820 | 100 | Minus |
| 3L | 28110227 | 3L | 11607435..11607591 | 935..779 | 785 | 100 | Minus |
| 3L | 28110227 | 3L | 11606103..11606200 | 1997..1900 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 11608537..11608606 | 246..177 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:46:11 has no hits.
BS24166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:55 Download gff for
BS24166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RF | 507..2486 | 17..1996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:30 Download gff for
BS24166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RE | 629..2608 | 17..1996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:51 Download gff for
BS24166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RE | 629..2608 | 17..1996 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:51 Download gff for
BS24166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11606104..11606198 | 1902..1996 | 100 | <- | Minus |
| 3L | 11606257..11606471 | 1687..1901 | 100 | <- | Minus |
| 3L | 11606536..11607083 | 1139..1686 | 100 | <- | Minus |
| 3L | 11607144..11607346 | 936..1138 | 100 | <- | Minus |
| 3L | 11607435..11607591 | 779..935 | 100 | <- | Minus |
| 3L | 11607652..11608183 | 247..778 | 100 | <- | Minus |
| 3L | 11608537..11608604 | 179..246 | 100 | <- | Minus |
| 3L | 11608676..11608837 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:30 Download gff for
BS24166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11599204..11599298 | 1902..1996 | 100 | <- | Minus |
| arm_3L | 11599357..11599571 | 1687..1901 | 100 | <- | Minus |
| arm_3L | 11599636..11600183 | 1139..1686 | 100 | <- | Minus |
| arm_3L | 11600244..11600446 | 936..1138 | 100 | <- | Minus |
| arm_3L | 11600535..11600691 | 779..935 | 100 | <- | Minus |
| arm_3L | 11600752..11601283 | 247..778 | 100 | <- | Minus |
| arm_3L | 11601637..11601704 | 179..246 | 100 | <- | Minus |
| arm_3L | 11601776..11601937 | 17..178 | 100 | | Minus |
BS24166.pep Sequence
Translation from 16 to 1995
> BS24166.pep
MTIKPVSAPPSAKRVAGNVDPDNKEAQVVVVEQSVVSQTHNHAHNHRNVV
IDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAHLYKRDRLER
EKLVHPTAAAGSGAPGVSGSKCNSPPSTSTSGSSSPSAVGRNSPEHLGLG
CTTVPTAQVQMSTSTAAANLLKTVEETFSGYNSGDEHHQPKERLIPVEEW
QRRDLEFAKCMEQRGYELKPVEEDGACLFRSISLQIYGDEEMHDVIRQHT
MDYIHENREYFGQFVTEDINSYIQRKRARDAHGNHIEIQAISEIYSRTVE
VYCYQSNPINIFNSEQSQAGYPPLRLSYQRGSHYNAILDPYNATVGVGLG
LAGYKPEIQTKEAVRLSEQLEIEQTMFEDKLKTTDWEATNEAIEEQIARE
SYLQWCRENTQRSRNSNTAAGSATSSTVTSAEALTDSDASPSKYSACGGT
GSSGNPPVALTSGSGGDGAGPAFSLSPKTLNQFSHKLPQEVNELGGYDSD
ATDMSSTSSVGHSGGSSSPSTAASQRSGKGSKSQRRATALRKKRRHETRE
TTLASKSAEALEAPLRKSPKRDSAPSVARADTPEAEQRPSTSKQSSHSPQ
KNVDSKSPTEQSYSSFYQELLEASYANEGANESEMLQQAIQMSTRDYMED
QKRKFLFGP*
BS24166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6091-PF | 659 | CG6091-PF | 1..659 | 1..659 | 3412 | 100 | Plus |
| CG6091-PE | 659 | CG6091-PE | 1..659 | 1..659 | 3412 | 100 | Plus |
| CG6091-PG | 568 | CG6091-PG | 1..556 | 1..556 | 2894 | 100 | Plus |
| CG6091-PD | 499 | CG6091-PD | 1..499 | 161..659 | 2570 | 100 | Plus |
