BS24168.complete Sequence
830 bp assembled on 2011-01-28
GenBank Submission: KX800577
> BS24168.complete
GAAGTTATCAGTCGACATGACCAAGATTTGGGAGGAGAAGAAGCGGGCCC
TCAAGGCACTGGACTACTTTGACTTTCTCGATGACGATCAGATCGTGGAA
GCTTGCCGATATGGGAGGCTGAAGCAATTCGATCCACTGGATACCATATT
CTGTGAGGATATAGGATCCATGACCAATGTCCACTTCGTGCTCAGTGGAG
AATGTCTGATACTCCAGTGTCTGAATATAAAGGTTACTATGAAAAGGGGT
AAAAAGGTATATGATCTTTTGCCGGCGTCGGAAGGCGATGTGTCCAAAAT
GTTTAGAAAAGCCGTGAGATCAACATTTTCCTCGCAAAGTACCAACGAAG
ATCAGTCAAAAATAGATATTCTTGATCTTGTGGCAAGTACGAGTTCCAGT
TCCACGGGAGATGCGCAAAAAAGTGCTCTCAACCGCAAGACACCCACATT
TGAAAGCCATTTCATCGATGTGGGTACCATAACATTTGGAGGCATTTTCG
GCTTGGGCGAGAAAATGGAAAATCGCGTGATAATGGCAAGGAGCACGGTT
CAATGCCTGATACTTCCCAGATTTTTCCTGCTGGAAAAGAAACAAAATCC
CGGCAATGTTTGGGAGCGCAGACTGTTGTATGTGGGCGTCATGGTTCCAT
CCAGGGAAGCCCTTTTTGCCCACTATCGTAAAGCTTGCGACTGGAAGAAA
TTCAAAAACGACCTAATTTCCGAGACCTTGAAGCCCTCCGATAATGACAT
CACACACATCGAAGACGTTCCCATAATTTGCAGAATTGTAGAATCACCAG
AGGATCTCAATTAGAAGCTTTCTAGACCAT
BS24168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14693-RC | 1410 | CG14693-PC | 611..1410 | 15..814 | 4000 | 100 | Plus |
| CG14693-RB | 798 | CG14693-PB | 1..798 | 17..814 | 3990 | 100 | Plus |
| CG14693-RE | 1761 | CG14693-PE | 611..1036 | 15..440 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14693-RC | 1738 | CG14693-RC | 681..1480 | 15..814 | 4000 | 100 | Plus |
| CG14693-RB | 1153 | CG14693-RB | 96..895 | 15..814 | 4000 | 100 | Plus |
| CG14693-RF | 2195 | CG14693-RF | 787..1212 | 15..440 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10811839..10812215 | 814..438 | 1885 | 100 | Minus |
| 3R | 32079331 | 3R | 10812798..10813006 | 439..231 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 10813058..10813202 | 234..90 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 10813465..10813541 | 91..15 | 385 | 100 | Minus |
| X | 23542271 | X | 16008270..16008377 | 449..556 | 240 | 81.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:47:56 has no hits.
BS24168.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:23 Download gff for
BS24168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14693-RC | 683..1480 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:56 Download gff for
BS24168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14693-RB | 98..895 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:43 Download gff for
BS24168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14693-RB | 98..895 | 17..814 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:43 Download gff for
BS24168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10813060..10813200 | 92..232 | 100 | <- | Minus |
| 3R | 10813465..10813539 | 17..91 | 100 | | Minus |
| 3R | 10811839..10812213 | 440..814 | 100 | <- | Minus |
| 3R | 10812798..10813004 | 233..439 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:56 Download gff for
BS24168.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6637561..6637935 | 440..814 | 100 | <- | Minus |
| arm_3R | 6638520..6638726 | 233..439 | 100 | <- | Minus |
| arm_3R | 6638782..6638922 | 92..232 | 100 | <- | Minus |
| arm_3R | 6639187..6639261 | 17..91 | 100 | | Minus |
BS24168.pep Sequence
Translation from 16 to 813
> BS24168.pep
MTKIWEEKKRALKALDYFDFLDDDQIVEACRYGRLKQFDPLDTIFCEDIG
SMTNVHFVLSGECLILQCLNIKVTMKRGKKVYDLLPASEGDVSKMFRKAV
RSTFSSQSTNEDQSKIDILDLVASTSSSSTGDAQKSALNRKTPTFESHFI
DVGTITFGGIFGLGEKMENRVIMARSTVQCLILPRFFLLEKKQNPGNVWE
RRLLYVGVMVPSREALFAHYRKACDWKKFKNDLISETLKPSDNDITHIED
VPIICRIVESPEDLN*
BS24168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14693-PB | 265 | CG14693-PB | 1..265 | 1..265 | 1376 | 100 | Plus |
| CG14693-PC | 469 | CG14693-PC | 205..469 | 1..265 | 1376 | 100 | Plus |
| CG14693-PE | 586 | CG14693-PE | 205..345 | 1..141 | 718 | 100 | Plus |
| CG14693-PE | 586 | CG14693-PE | 440..586 | 119..265 | 667 | 88.4 | Plus |
| CG8958-PA | 621 | CG8958-PA | 470..619 | 125..263 | 374 | 50.7 | Plus |
| CG12698-PA | 580 | CG12698-PA | 420..580 | 103..265 | 373 | 45.7 | Plus |
| CG8958-PA | 621 | CG8958-PA | 208..343 | 1..140 | 287 | 44.8 | Plus |
