BS24169.complete Sequence
2270 bp assembled on 2011-02-18
GenBank Submission: KX801777
> BS24169.complete
GAAGTTATCAGTCGACATGGTAGACCTTCGAAAAAAAATCAGCCGAATGG
CGCTGGTAGTAACGTGCTATTACTTTATACACATTTCTTATAAATACGCA
TATGCTACTAGCGTTAGTGGTACCTCGCGAACTGTAGCAGGAAATGGAAA
CGTAAACCATCGTTTGCCTCGTACAAGTGCCAGCTATTTTGGTAGTGGAG
CTAGTGCAAACACAAATTTTAAAACAGTTACAAAATCAAAAAATGTAACG
AGATACGGAAACATACATATCAGAGAACAACAATTGCTGAACATATTTGA
AGTTATTATAGACACCCTTGAAGGAAAACTAAAACGCATTGACAGTCTAG
ATAATACAGTTGATCTTCTTATGAAAAATATGGAAACGCTGCAAAATCGG
GTAGTGAATAACGTGTTAAAAACTGATTTTATTATATCTCAACTGAAAAA
TATAGAAAAAACTATTTCTAATGAAATGCTTCAAGGTCAATCATCAAACT
TGAATGTTGCTTACGAAACCACAAAAATTACACAAAATTCTTCAACGCTC
CTAAAGGAACAAATCGTTAATTTGGATCGAAAAGTATCTGATATTGATAA
TAAGCTGGAATGTATGAAAGTCCAATTAGATAATAACTTGTTGCACGTTG
AAGACTTTAATGCCGAAGCTAGTGAGAAAAAACCCGTTACAATAAATGTA
AATGATGTCACAAAGGCATTGAGCTATGTAGCTATGACACAAGTAACATC
CGAATTGAGTGAGCTTCGCGATTCAACTGACAACATTGATAAAAAGTTAC
AGTTTTATATAAATATCGCTTCTGAAAATATCGGAAAAATGACAAGCATG
ATGCATGAGATTCATTGTGCTGTAGTTCATCATAACAATCAATTTAAATT
TTTGAATGTGACAACACATTCAAAATCAAATAATATTAATAAGCTCGTTA
AAGAAATAAGGCCAATGGGTGTAGTATCTGAACAAAACGATAATGTTTGG
GACGTTGGAGTAGACACAAAATCAACTGATGGTCATCTTCTCTCCAAGTC
CACTGCCCCATTGAGTCAGACACAACGTCAAGAACGTGCAATAGATGAAA
TCCACCATGACAAAAAACCCAAATCGTACTTGAATATTAATAACTTCGAT
ATGGTTAAAAAACAATTTGAAAAACAGGAAAATTTTAAGCCCCCTGAAGA
GATATCAGAGACAAGAATCAAAGAAGCCTTGGAATATGAATCAAAAAACT
ACACTGACACGGATGAAAATTCAAGAACGGAGATCTTACTTTTATCCCTC
TCTAATATTCAACCAACCATAGTTAATAAAACTATAACTACACCGTTTAC
TTCCACACCTGGAGATGGAGATGTGCTCGGTCCGCTACATTCGGAGTCGT
TAGACTCTAACCGAACTCACTACAACGGACCAGCAGTCAATGGATTGAAA
TCTGCAAATCGCAAAGACCGAATTATCTTTCCAAGCATAAAAAAAAAACC
AGCATTTCTAAACACAACGATTTCCAATGATTTTTGGGCGCTCAAGGATG
TAAAAGGATTTTCCTGTGTAGACATTTTAAATGCTGGAATGAAACAATCA
GGAGTATTTTATTTACAAATTCGTGGTACGACGTATTGGTTTTTAAAGGT
ATACTGCGATCAAGAAACGACGGATGGAGGTTGGACGGTTATTCAAAGGC
GCGACGATTTTAAGGACTCCCGTGAAAACTTCAACAGAGATTGGGCGGAT
TACAAAAATGGATTCGGTGAACCCAGCAAAGACTTTTGGCTCGGTAATGA
AAACATATATATGTTGACAAATAACGAGGAATATTCATTACGTGTAGAAC
TAGAAGACTTCGAAGGCAACAAACGATATGCTCAGTACTCACATTTCAAA
ATTCATTCAGAAGCAGATTATTATAAACTGGAAATAGACGGATATGAGGG
TAATGCTGGAGATTCGTTAAATGACCCGTGGTACGGCTCAAATAATAGCC
CATTTTCAACATACAATAAAGATAACGATAGAAGTTCTCTCAATTGCGCA
AGCATGTTAAAGGGTGGCTGGTGGTGGAAGTCCTGTGGACGGGGTCTAAA
TGGTCTTTATCTTCATGATCCCCAAGATATAACTGCGCGGCAAGGAATAG
TATGGTTTCGCTGGAGAGGCTGGGACTACACATTAAAAAAGTCCAAAATG
ATGATTCGGCCTAGGATACCACCACAACAGACGATATCTGGAACGTCTTT
ATAGAAGCTTTCTAGACCAT
BS24169.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG41520-RA | 2238 | CG41520-PA | 1..2238 | 17..2254 | 11190 | 100 | Plus |
| CG41520-RD | 1884 | CG41520-PD | 1..1884 | 371..2254 | 9420 | 100 | Plus |
| CG41520-RB | 2190 | CG41520-PB | 1..1673 | 17..1689 | 8365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG41520-RA | 2674 | CG41520-RA | 277..2516 | 16..2255 | 11200 | 100 | Plus |
| CG41520-RD | 2325 | CG41520-RD | 184..2167 | 272..2255 | 9920 | 100 | Plus |
| CG41520-RB | 2626 | CG41520-RB | 277..1950 | 16..1689 | 8370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1726641..1727618 | 271..1248 | 4890 | 100 | Plus |
| 2R | 25286936 | 2R | 1727672..1727979 | 1249..1556 | 1540 | 100 | Plus |
| 2R | 25286936 | 2R | 1649892..1650149 | 16..273 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 1778585..1778779 | 2061..2255 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 1762107..1762295 | 1687..1875 | 945 | 100 | Plus |
| 2R | 25286936 | 2R | 1772027..1772215 | 1875..2063 | 945 | 100 | Plus |
| 2R | 25286936 | 2R | 1761924..1762057 | 1556..1689 | 670 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 3947..4052 | 1800..1902 | 135 | 65.1 | Plus |
| Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 3395..3445 | 1107..1157 | 120 | 70.6 | Plus |
| rover | 7318 | rover ROVER 7318bp | 6554..6666 | 221..334 | 118 | 58.6 | Plus |
| FB | 1106 | FB DMTNFB 1106bp AKA(J01084) Derived from V00246 (g8708) (Rel. 36, Last updated, Version 3). | 161..208 | 1188..1141 | 114 | 70.8 | Minus |
BS24169.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:52 Download gff for
BS24169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG41520-RA | 278..2515 | 17..2254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:41 Download gff for
BS24169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG41520-RA | 278..2515 | 17..2254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:58 Download gff for
BS24169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG41520-RA | 278..2515 | 17..2254 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:58 Download gff for
BS24169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1649893..1650149 | 17..273 | 100 | -> | Plus |
| 2R | 1726644..1727618 | 274..1248 | 100 | -> | Plus |
| 2R | 1727672..1727978 | 1249..1555 | 100 | -> | Plus |
| 2R | 1761924..1762055 | 1556..1687 | 100 | -> | Plus |
| 2R | 1762108..1762295 | 1688..1875 | 100 | -> | Plus |
| 2R | 1772028..1772214 | 1876..2062 | 100 | -> | Plus |
| 2R | 1778587..1778778 | 2063..2254 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:41 Download gff for
BS24169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArmU | 1369156..1369347 | 2063..2254 | 100 | | Plus |
| ArmU | 1318241..1318547 | 1249..1555 | 100 | -> | Plus |
| ArmU | 1352493..1352624 | 1556..1687 | 100 | -> | Plus |
| ArmU | 1352677..1352864 | 1688..1875 | 100 | -> | Plus |
| ArmU | 1242917..1243173 | 17..273 | 100 | -> | Plus |
| ArmU | 1317213..1318187 | 274..1248 | 100 | -> | Plus |
| ArmU | 1362597..1362783 | 1876..2062 | 100 | -> | Plus |
BS24169.pep Sequence
Translation from 16 to 2253
> BS24169.pep
MVDLRKKISRMALVVTCYYFIHISYKYAYATSVSGTSRTVAGNGNVNHRL
PRTSASYFGSGASANTNFKTVTKSKNVTRYGNIHIREQQLLNIFEVIIDT
LEGKLKRIDSLDNTVDLLMKNMETLQNRVVNNVLKTDFIISQLKNIEKTI
SNEMLQGQSSNLNVAYETTKITQNSSTLLKEQIVNLDRKVSDIDNKLECM
KVQLDNNLLHVEDFNAEASEKKPVTINVNDVTKALSYVAMTQVTSELSEL
RDSTDNIDKKLQFYINIASENIGKMTSMMHEIHCAVVHHNNQFKFLNVTT
HSKSNNINKLVKEIRPMGVVSEQNDNVWDVGVDTKSTDGHLLSKSTAPLS
QTQRQERAIDEIHHDKKPKSYLNINNFDMVKKQFEKQENFKPPEEISETR
IKEALEYESKNYTDTDENSRTEILLLSLSNIQPTIVNKTITTPFTSTPGD
GDVLGPLHSESLDSNRTHYNGPAVNGLKSANRKDRIIFPSIKKKPAFLNT
TISNDFWALKDVKGFSCVDILNAGMKQSGVFYLQIRGTTYWFLKVYCDQE
TTDGGWTVIQRRDDFKDSRENFNRDWADYKNGFGEPSKDFWLGNENIYML
TNNEEYSLRVELEDFEGNKRYAQYSHFKIHSEADYYKLEIDGYEGNAGDS
LNDPWYGSNNSPFSTYNKDNDRSSLNCASMLKGGWWWKSCGRGLNGLYLH
DPQDITARQGIVWFRWRGWDYTLKKSKMMIRPRIPPQQTISGTSL*
BS24169.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG41520-PA | 745 | CG41520-PA | 1..745 | 1..745 | 3923 | 100 | Plus |
| CG41520-PB | 729 | CG41520-PB | 1..729 | 1..745 | 3811 | 97.9 | Plus |
| CG41520-PD | 627 | CG41520-PD | 1..627 | 119..745 | 3326 | 100 | Plus |
| CG41520-PC | 514 | CG41520-PC | 1..513 | 1..513 | 2617 | 100 | Plus |
| CG5550-PA | 246 | CG5550-PA | 45..246 | 526..733 | 379 | 37.3 | Plus |
