BS24170.complete Sequence
1787 bp assembled on 2011-02-16
GenBank Submission: KX804634
> BS24170.complete
GAAGTTATCAGTCGACATGACAAACTGCCAAAGTTCAGTGTTCATAGTCG
TAGGCACCCTGTTTTCCATCATGGCAGCGGCTCAATCGGCACCCGTTTCC
ACCACCACACAGGCAGAGATCTACCTGTCCCAGTTCGGCTATCTACCCGC
CTCTGCCCGCAATCCCGCCAGCAGTGGGCTACACGACCAGCGGACCTGGG
TGAGTGCCATCGAGGAGTTCCAAAGCTTCGCGGGACTGAACATCACCGGC
GAGCTGGATGCGGAGACAATGAAGCTGATGTCCCTGCCCCGCTGCGGAGT
TCGGGATCGCGTCGGCACCGGTGACAGCCGCTCCAAGCGGTACGCCCTGC
AGGGCAGTCGCTGGCGTGTGAAGAACCTCACCTACAAGATCTCCAAGTAC
CCCAAGCGGCTGAAGCGAGTCGATGTCGACGCGGAGATCGGTCGCGCATT
TGCCGTGTGGTCCGAGGACACCGACCTGACCTTCACCAGGAAGACCTCCG
GCCCCGTGCACATCGAGATCAAGTTCGTGGAGAGCGAGCATGGAGACGGC
GATGCCTTTGACGGTCAAGGCGGCACCCTGGCGCATGCCTTCTTCCCTGT
CTTTGGCGGAGATGCCCACTTTGACGACGCGGAACTGTGGACCATTGGCT
CTCCTCGAGGCACCAATCTGTTCCAGGTGGCCGCTCACGAGTTCGGTCAC
TCCTTGGGACTCTCCCACTCAGATCAGAGCTCCGCTCTGATGGCGCCCTT
CTATCGCGGCTTTGAACCCGTCTTCAAGTTGGACGAGGACGACAAGGCGG
CCATCCAGTCACTGTATGGGCGCAAAACAAACCAGCTGAGGCCTACCAAC
GTGTACCCGGCCACCACCCAGCGGCCATACTCTCCTCCAAAGGTGCCACT
AGACGACTCCATCTGCAAGGACTCCAAGGTAGACACACTCTTCAACTCGG
CGCAGGGCGAGACCTACGCCTTCAAGGGCGACAAATACTACAAGCTGACC
ACGGACTCCGTGGAGGAGGGCTACCCACAGCTCATCTCCAAGGGCTGGCC
GGGATTGCCGGGCAACATCGATGCGGCGTTCACCTACAAGAACGGCAAGA
CGTACTTCTTCAAGGGTACTCAGTACTGGCGCTACCAGGGCCGTCAGATG
GACGGCGTCTACCCTAAGGAAATCAGCGAGGGCTTCACGGGCATTCCCGA
CCATCTGGACGCCGCAATGGTTTGGGGGGGCAATGGCAAGATATACTTCT
TCAAGGGCAGCAAGTTCTGGCGCTTCGATCCGGCCAAGAGGCCGCCGGTC
AAGGCTAGCTATCCCAAGCCCATCTCCAACTGGGAGGGTGTTCCCAACAA
CCTGGACGCAGCGCTGAAGTACACCAATGGCTACACGTACTTCTTCAAGG
GCGACAAGTACTACAGATTCCATGACGCCCGATTTGCTGTTGACTCGGCC
ACGCCCCCCTTCCCCAGACCCACCGCCCACTGGTGGTTCGGCTGCAAGAA
CACGCCCTCGTCCACAGGTAATATCGTCGAAGGCTCGGACAACGAGTTCG
AACAGCACTCCATGATCCCGCATGCCGACGATGGCAACGGTGATGACTTT
GACGCAGCCGTGGGCGATCACCAGTCCAACGACGAACCAATAGTTCCGGA
AGTGGCCGAGCGAACCGGAAACGGAGCCATGTCCCAGTCCAAGCTGACGA
GCAGCTCCGCCGTGAGCACTGTGATCACCACCATCCTGATGTGCCTCGTC
TCCAAGCTCATCGTTAGCTAAAAGCTTTCTAGACCAT
BS24170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mmp1-RC | 1755 | CG4859-PC | 1..1755 | 17..1771 | 8760 | 99.9 | Plus |
| Mmp1-RG | 1626 | CG4859-PG | 1..1591 | 17..1607 | 7940 | 99.9 | Plus |
| Mmp1-RF | 1626 | CG4859-PF | 1..1591 | 17..1607 | 7940 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mmp1-RC | 3105 | CG4859-RC | 502..2259 | 17..1774 | 8775 | 99.9 | Plus |
| Mmp1-RG | 2303 | CG4859-RG | 416..2006 | 17..1607 | 7940 | 99.9 | Plus |
| Mmp1-RF | 2398 | CG4859-RF | 511..2101 | 17..1607 | 7940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24675208..24676125 | 1440..523 | 4575 | 99.9 | Minus |
| 2R | 25286936 | 2R | 24676194..24676601 | 524..117 | 2040 | 100 | Minus |
| 2R | 25286936 | 2R | 24672140..24672308 | 1774..1606 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 24674973..24675141 | 1607..1439 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 24682214..24682315 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:40:46 has no hits.
BS24170.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-16 15:10:00 Download gff for
BS24170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mmp1-RC | 499..2251 | 17..1769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:33 Download gff for
BS24170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mmp1-RC | 502..2254 | 17..1769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:34 Download gff for
BS24170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mmp1-RC | 502..2254 | 17..1769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:34 Download gff for
BS24170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24672145..24672306 | 1608..1769 | 100 | <- | Minus |
| 2R | 24674973..24675141 | 1439..1607 | 100 | <- | Minus |
| 2R | 24675210..24676125 | 523..1438 | 99 | <- | Minus |
| 2R | 24676196..24676599 | 119..522 | 100 | <- | Minus |
| 2R | 24682214..24682315 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:33 Download gff for
BS24170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20559668..20559829 | 1608..1769 | 100 | <- | Minus |
| arm_2R | 20562496..20562664 | 1439..1607 | 100 | <- | Minus |
| arm_2R | 20562733..20563648 | 523..1438 | 99 | <- | Minus |
| arm_2R | 20563719..20564122 | 119..522 | 100 | <- | Minus |
| arm_2R | 20569737..20569838 | 17..118 | 100 | | Minus |
BS24170.pep Sequence
Translation from 16 to 1770
> BS24170.pep
MTNCQSSVFIVVGTLFSIMAAAQSAPVSTTTQAEIYLSQFGYLPASARNP
ASSGLHDQRTWVSAIEEFQSFAGLNITGELDAETMKLMSLPRCGVRDRVG
TGDSRSKRYALQGSRWRVKNLTYKISKYPKRLKRVDVDAEIGRAFAVWSE
DTDLTFTRKTSGPVHIEIKFVESEHGDGDAFDGQGGTLAHAFFPVFGGDA
HFDDAELWTIGSPRGTNLFQVAAHEFGHSLGLSHSDQSSALMAPFYRGFE
PVFKLDEDDKAAIQSLYGRKTNQLRPTNVYPATTQRPYSPPKVPLDDSIC
KDSKVDTLFNSAQGETYAFKGDKYYKLTTDSVEEGYPQLISKGWPGLPGN
IDAAFTYKNGKTYFFKGTQYWRYQGRQMDGVYPKEISEGFTGIPDHLDAA
MVWGGNGKIYFFKGSKFWRFDPAKRPPVKASYPKPISNWEGVPNNLDAAL
KYTNGYTYFFKGDKYYRFHDARFAVDSATPPFPRPTAHWWFGCKNTPSST
GNIVEGSDNEFEQHSMIPHADDGNGDDFDAAVGDHQSNDEPIVPEVAERT
GNGAMSQSKLTSSSAVSTVITTILMCLVSKLIVS*
BS24170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mmp1-PC | 584 | CG4859-PC | 1..584 | 1..584 | 3130 | 100 | Plus |
| Mmp1-PH | 554 | CG4859-PH | 1..554 | 1..584 | 2923 | 94.9 | Plus |
| Mmp1-PG | 541 | CG4859-PG | 1..537 | 1..537 | 2874 | 99.1 | Plus |
| Mmp1-PF | 541 | CG4859-PF | 1..537 | 1..537 | 2874 | 99.1 | Plus |
| Mmp1-PD | 541 | CG4859-PD | 1..537 | 1..537 | 2874 | 99.1 | Plus |
