BS24171.complete Sequence
965 bp assembled on 2011-01-28
GenBank Submission: KX803757
> BS24171.complete
GAAGTTATCAGTCGACATGCCGGCCATCCGACCACTGAGTCCCGAGCTCC
AAAAGACTGCGATTGAGAACCTGAATGAGGTGCCTAATAAGTTGGATGAC
GACATCGCCGCCCTGAGGGATTGGATTAAGCAGCAACCCCATTTGAAAGC
CCGCACAGATGACCAGTTCTTGGTGAACTTCCTGCGCGGCTGCAAGTTCA
GTTTGGAAAGGACCAAGTCGAAGATCGACAGGTTCTACACACTACGCACC
AAGTACCCAGAGTTTTATTTGGGTCATAATGTCGATGTGGACAAAGCACT
GGAGATATTCCGATTGGGCACCATAGTTATTCTGCCACGTCCTCTAAACG
ATAATGGCCCGCGATTGGCTCTGCTGCGCATGGCCTGCTATGATCCCAGC
AAATACACCCTCCAGGAGGTGAATCGAGCTGCTGGTCTCATGCAGCAGAT
TATGCTCGACGAGGACGATGTGGCCATTGTGAATGGTTTAATATCCATTC
TGGATCTGTCCAATGTCACCACCGGGCACTTCCTGCAGATGTCACCGTCC
TTCGCCAAGAAGATGACCGTTTTTCAGGAGGAGGCCCTGCCCCTGCGACC
GCAGGGAATCCATTTCATTAATACGCCCAACGGATTTGACACCATCTTCA
ATATGATCAAGCCCATGATGTCTAAGAAGCAGCAAGGACGCCTCTACGTT
CATGGAAGCAAATGGGAGGCACTCTACAATCAGATTCCCAAACAGTATTT
GCCAGTGGAATACGGAGGGGAGAACGGATCGATTCCGGAGCTGCTGCAGC
AGTGGGAGCAGCGTATTCTAGCCTACCGGAATTACTGGGAGGAGGAGAAG
AACTACGGAACCGATGAAAGCCTCCGAGTGGGTCAGCCTGTTGACTTCGA
GAGTCTTTTTGGTCTGCAGGGCTCCTTCCGGCAATTGAATGTGGACTGAA
AGCTTTCTAGACCAT
BS24171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33966-RA | 933 | CG33966-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33966-RA | 1163 | CG33966-RA | 44..977 | 17..950 | 4670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1234539..1234912 | 318..691 | 1870 | 100 | Plus |
| 3L | 28110227 | 3L | 1234173..1234474 | 17..318 | 1510 | 100 | Plus |
| 3L | 28110227 | 3L | 1234976..1235234 | 692..950 | 1295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:46:41 has no hits.
BS24171.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:21 Download gff for
BS24171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33966-RA | 36..967 | 17..948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:09:28 Download gff for
BS24171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33966-RA | 44..975 | 17..948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:15 Download gff for
BS24171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33966-RA | 44..975 | 17..948 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:15 Download gff for
BS24171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1234173..1234474 | 17..318 | 100 | -> | Plus |
| 3L | 1234540..1234912 | 319..691 | 100 | -> | Plus |
| 3L | 1234976..1235232 | 692..948 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:28 Download gff for
BS24171.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1234173..1234474 | 17..318 | 100 | -> | Plus |
| arm_3L | 1234540..1234912 | 319..691 | 100 | -> | Plus |
| arm_3L | 1234976..1235232 | 692..948 | 100 | | Plus |
BS24171.pep Sequence
Translation from 16 to 948
> BS24171.pep
MPAIRPLSPELQKTAIENLNEVPNKLDDDIAALRDWIKQQPHLKARTDDQ
FLVNFLRGCKFSLERTKSKIDRFYTLRTKYPEFYLGHNVDVDKALEIFRL
GTIVILPRPLNDNGPRLALLRMACYDPSKYTLQEVNRAAGLMQQIMLDED
DVAIVNGLISILDLSNVTTGHFLQMSPSFAKKMTVFQEEALPLRPQGIHF
INTPNGFDTIFNMIKPMMSKKQQGRLYVHGSKWEALYNQIPKQYLPVEYG
GENGSIPELLQQWEQRILAYRNYWEEEKNYGTDESLRVGQPVDFESLFGL
QGSFRQLNVD*
BS24171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33966-PA | 310 | CG33966-PA | 1..310 | 1..310 | 1629 | 100 | Plus |
| CG33514-PA | 311 | CG33514-PA | 3..311 | 2..310 | 916 | 55.3 | Plus |
| CG12926-PA | 313 | CG12926-PA | 8..313 | 3..310 | 766 | 46.1 | Plus |
| CG30339-PA | 308 | CG30339-PA | 1..308 | 1..310 | 672 | 42.6 | Plus |
| CG33965-PA | 317 | CG33965-PA | 8..317 | 3..310 | 671 | 43.4 | Plus |
