BS24173.complete Sequence
1376 bp assembled on 2011-02-18
GenBank Submission: KX803512
> BS24173.complete
GAAGTTATCAGTCGACATGTTCGTCAAAGTGAAATTAGATGCCGAGGGAA
ACACAAGTGTGATGCCGGAAATGTTCGAGCTCCACAATAATGCGACCATT
GGTGAATTGAAGCAAAAACTGGAGGTAAAAGTAGGTCTTCCCTTGGCTCG
CCTAAACGTACAGAGTTTTCACAAGTCTCTGGAAAACGATGAGTTTATTA
CAAATTTGCTCAGAATTCCGGATAAAAGCGATTATACTTATCCGTCGACA
ACGCTTAATGGTACAGCCTTTTCGCTGTACCACGAAAATTCCTTTGTAGG
ATTTCTCCAATTCTATACAATTCCAGAGGGCAAGAGCCAACTGGATTTCC
TTAACATGCCGAAGAGCTCTATGCTTCTGCCAGTGGACAGGCTTCCGCAG
TTTTGCGAGGCTTCGAACTCGCAAGATTCCTCCGCATCCAGTGCGTCGAA
CCAGACGAACGCCAGCTTCGAATCCGCAAGCACGAGCGCCAGCTCCGTAG
CGCGAAAGACGAGAGTGTGCGCCTCCGATGAGGAATCGGCTGCCAAAAGA
ATACGAAGCAACCAAGAGAACAGCGTGGTCAAGGTGGTTCCGCAGCAGAA
TCTGCTCGCGGACAAACGAGCCGGCAGCATGGCTTCCATATTTGGTTCGA
AGATCCACCTGATGAACTGCTGCAAGACGGAGACCAGCCGCACAAGCTGC
TCAGTGGAGCAGGCCGAGGAGTGCAAGGAGAGGAAGAAGGACTGCTGCAC
GCCAAAGAATTGTCGCAAGAGGGATACTCGGCCGCCGTATGCGAACACAA
TGCCCGAGAACCGACGTTACGCCTTGGTGATAACTAACCAGAGTTCGTGC
TCGGATGGTGTGGACACTATCGCCCTAATGGAGCACTTTCATTCAATATT
CGAGGACAGTGGATCGAGCGTCAGCGATCTCAATTTTAGTGAGTGTGCCT
CAACGCAGACATTCGACTGCAACATGCTGGTGGTCTGCGAGGATAACGAA
ACGGCCCAATGGGTCATCGAAGCAGTCGAAGGTGTGGAGCCGCCCCACTC
CTGCCAGCCCTTCATTAAGTTCTTCGATCTAGTGAGGACGACCTTTGTCC
TGCCCTTGGTCAGTCCGAATAAGTCGCTCTGTGTGATCTTCGCATTACTG
GAGTCACAGAACCCGGGCTTGAATACCGACAGATGGGCCGTCGTTAATCG
CTCCACTTTGGACTGCCAAGACGTGGAGAGGCAGGTCGCTCAATTCTGCG
ACAACGTCCTTATTGAGGTGTATATCGATGAGGATAGCAGGGATTTCATC
GCCGACCGGTGTTCCAAATTGCGATACTGTTTCTGGCAACTTAAATTCGA
TTTTATATAGAAGCTTTCTAGACCAT
BS24173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7208-RB | 1344 | CG7208-PB | 1..1344 | 17..1360 | 6720 | 100 | Plus |
| CG7208-RA | 1353 | CG7208-PA | 54..1353 | 61..1360 | 6500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7208-RB | 1563 | CG7208-RB | 93..1436 | 17..1360 | 6720 | 100 | Plus |
| CG7208-RA | 1607 | CG7208-RA | 181..1480 | 61..1360 | 6500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18183783..18184595 | 1360..548 | 4065 | 100 | Minus |
| 3R | 32079331 | 3R | 18184658..18185146 | 549..61 | 2445 | 100 | Minus |
| 3R | 32079331 | 3R | 18185261..18185305 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:32:09 has no hits.
BS24173.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 16:08:47 Download gff for
BS24173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7208-RB | 92..1430 | 22..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:26 Download gff for
BS24173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7208-RB | 98..1436 | 22..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:09 Download gff for
BS24173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7208-RB | 98..1436 | 22..1360 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:09 Download gff for
BS24173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18183783..18184593 | 550..1360 | 100 | <- | Minus |
| 3R | 18184658..18185145 | 62..549 | 100 | <- | Minus |
| 3R | 18185261..18185300 | 22..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:26 Download gff for
BS24173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14009505..14010315 | 550..1360 | 100 | <- | Minus |
| arm_3R | 14010380..14010867 | 62..549 | 100 | <- | Minus |
| arm_3R | 14010983..14011022 | 22..61 | 100 | | Minus |
BS24173.pep Sequence
Translation from 16 to 1359
> BS24173.pep
MFVKVKLDAEGNTSVMPEMFELHNNATIGELKQKLEVKVGLPLARLNVQS
FHKSLENDEFITNLLRIPDKSDYTYPSTTLNGTAFSLYHENSFVGFLQFY
TIPEGKSQLDFLNMPKSSMLLPVDRLPQFCEASNSQDSSASSASNQTNAS
FESASTSASSVARKTRVCASDEESAAKRIRSNQENSVVKVVPQQNLLADK
RAGSMASIFGSKIHLMNCCKTETSRTSCSVEQAEECKERKKDCCTPKNCR
KRDTRPPYANTMPENRRYALVITNQSSCSDGVDTIALMEHFHSIFEDSGS
SVSDLNFSECASTQTFDCNMLVVCEDNETAQWVIEAVEGVEPPHSCQPFI
KFFDLVRTTFVLPLVSPNKSLCVIFALLESQNPGLNTDRWAVVNRSTLDC
QDVERQVAQFCDNVLIEVYIDEDSRDFIADRCSKLRYCFWQLKFDFI*
BS24173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7208-PB | 447 | CG7208-PB | 1..447 | 1..447 | 2333 | 100 | Plus |
| CG7208-PA | 450 | CG7208-PA | 19..450 | 16..447 | 2260 | 100 | Plus |
| CG31948-PA | 303 | CG31948-PA | 69..296 | 223..446 | 419 | 37.2 | Plus |
| CG31948-PB | 372 | CG31948-PB | 138..365 | 223..446 | 419 | 37.2 | Plus |
