BS24174.complete Sequence
1619 bp assembled on 2011-02-18
GenBank Submission: KX806133
> BS24174.complete
GAAGTTATCAGTCGACATGAGTAGTCAACCTGCCAGCCAGCCCGATAGCA
TCGATTTAGCCTATGATATGTGGGCGGGCCAATTCGAATTCGTAGGACCC
ACAAATCAGCAGAGCAACAAAAACAGCAACAACAACAACAACAATAGCAA
TTTGAACAACAACAAGTGCAGAATCGGAGCGCAACAAAACCGAAAACTAT
CTACGGATAGTCTGGAGGATCTGAATTTGAGTTTTAACACAAGTGCCTCG
CAAAATCCGCTAAGCAACGCCTACAGTTTGGGAGTCACTGGCGGTGCTGG
AAGTGACTACTGTGGCTTTGGAAAACACCCGCCAATATTGATCGATCAGG
AGACGTTTCTCAGCCTCAATCCAGCGGACTTTGAGGACATTGTGCCATCC
AATTCGGAGCCCAATTCGCTGGTTTTCATCGAAAACAAGCTGGAGACTAA
CAACAATAGCCTCGAATCGAACAACAATCATATAAACAATAATAATAACA
ATAAAATCTACAATTTGGAGAACCTGACAAGTAAATTCAATAATAAAACG
AATAATACGAATACAAACGGTTTCAAATTGGAGAACCTAAAGAATTTCAA
GAACAAACTACTCTGTGATTTCGAGGATACCAATAGCGGGGGAGGAGGAG
GTGGTGGCAGTGGCGGATCAGGACCTGTTGGCATGATGAACGGCGCCCTC
AGCGCAGAGATTTGCGATAATCTCAATGAGCAACTGGAACTGCTGCAGCG
CAAGGTGGACGATCTGTCAGATACACAGAATATAGCTGAGGATCGGACAA
CCCGCACCAAGACCGAATATGCAGTCCTTCAGGCGCGTTATCACATGCTC
GAAGAGCAGTACCGAGAGTCGGAACTGCGTGCCGAGGAGCGTTTGGCAGA
GGAGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGTGGAGCGTGAAGCCT
CGCTGCAGAACGAGAACTGCCAGATGAAGATCCGTGCCACCGAGATCGAG
GCAACGGCACTGCGGGAAGAAGCCGCCCGACTGCGTGTCCTGTGTGACAA
GCAGGCCAATGACCTCCATCGCACCGAGGAACAGTTGGAGCTGGCGCGCG
ACCAAATCGGCGTCCTGCAACAGGAGCACGAGGAGCAGGCACAGGCACTG
CGCCGCCACGAACAGGAGAAGAAGTCCACCGAGGAGCTGATGCTGGAGCT
GGGCCGGGAACTGCAGCGTGCTCGCGAGGAGAGTGGAGCCCGGGCAATGC
CGACCACATCGCCGGAGAGCATAAGACTGGAGGAGCTGCATCAGGAGCTC
GAGGAGATGCGCCAGAAGAACCGAACCCTCGAAGAACAGAACGAGGAGCT
GCAGGCCACGATGCTGACCAACCAGGCCACCATGCTGACAAATGGCGTGG
AGCAGGGTCGCCATCTGCTGAACGGAACACTCAACAGTTTGGCTCAGGAG
CTCGAGGAGATGTCACAAGCCCAGCTACAACAGGCCTTCCAGGAAAAGGA
GGATGAAAATGTTCGGCTTAAGCACTATATTGATACCATTCTACTCAACA
TCGTGGAGAACTATCCTCAATTGCTGGAAGTCAAGCCCATGGAGCGAAAG
TAGAAGCTTTCTAGACCAT
BS24174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RF | 1587 | CG33991-PF | 1..1587 | 17..1603 | 7935 | 100 | Plus |
| nuf-RE | 1587 | CG33991-PE | 1..1587 | 17..1603 | 7935 | 100 | Plus |
| nuf-RK | 1626 | CG33991-PK | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RF | 3099 | CG33991-RF | 317..1904 | 16..1603 | 7940 | 100 | Plus |
| nuf-RE | 3233 | CG33991-RE | 451..2038 | 16..1603 | 7940 | 100 | Plus |
| nuf-RK | 3138 | CG33991-RK | 317..1775 | 16..1474 | 7295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14225686..14226403 | 16..733 | 3590 | 100 | Plus |
| 3L | 28110227 | 3L | 14230654..14231112 | 867..1325 | 2295 | 100 | Plus |
| 3L | 28110227 | 3L | 14231177..14231325 | 1326..1474 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 14230176..14230310 | 734..868 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 14231924..14232055 | 1472..1603 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:33:53 has no hits.
BS24174.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 16:08:48 Download gff for
BS24174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RF | 316..1902 | 17..1603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:50 Download gff for
BS24174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RE | 452..2038 | 17..1603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:48 Download gff for
BS24174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RE | 452..2038 | 17..1603 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:48 Download gff for
BS24174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14225687..14226403 | 17..733 | 100 | -> | Plus |
| 3L | 14230176..14230310 | 734..868 | 100 | -> | Plus |
| 3L | 14230656..14231112 | 869..1325 | 100 | -> | Plus |
| 3L | 14231177..14231325 | 1326..1474 | 100 | -> | Plus |
| 3L | 14231927..14232055 | 1475..1603 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:50 Download gff for
BS24174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14218787..14219503 | 17..733 | 100 | -> | Plus |
| arm_3L | 14223276..14223410 | 734..868 | 100 | -> | Plus |
| arm_3L | 14223756..14224212 | 869..1325 | 100 | -> | Plus |
| arm_3L | 14224277..14224425 | 1326..1474 | 100 | -> | Plus |
| arm_3L | 14225027..14225155 | 1475..1603 | 100 | | Plus |
BS24174.pep Sequence
Translation from 16 to 1602
> BS24174.pep
MSSQPASQPDSIDLAYDMWAGQFEFVGPTNQQSNKNSNNNNNNSNLNNNK
CRIGAQQNRKLSTDSLEDLNLSFNTSASQNPLSNAYSLGVTGGAGSDYCG
FGKHPPILIDQETFLSLNPADFEDIVPSNSEPNSLVFIENKLETNNNSLE
SNNNHINNNNNNKIYNLENLTSKFNNKTNNTNTNGFKLENLKNFKNKLLC
DFEDTNSGGGGGGGSGGSGPVGMMNGALSAEICDNLNEQLELLQRKVDDL
SDTQNIAEDRTTRTKTEYAVLQARYHMLEEQYRESELRAEERLAEEQKRH
REILARVEREASLQNENCQMKIRATEIEATALREEAARLRVLCDKQANDL
HRTEEQLELARDQIGVLQQEHEEQAQALRRHEQEKKSTEELMLELGRELQ
RAREESGARAMPTTSPESIRLEELHQELEEMRQKNRTLEEQNEELQATML
TNQATMLTNGVEQGRHLLNGTLNSLAQELEEMSQAQLQQAFQEKEDENVR
LKHYIDTILLNIVENYPQLLEVKPMERK*
BS24174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-PF | 528 | CG33991-PF | 1..528 | 1..528 | 2706 | 100 | Plus |
| nuf-PE | 528 | CG33991-PE | 1..528 | 1..528 | 2706 | 100 | Plus |
| nuf-PK | 541 | CG33991-PK | 1..541 | 1..528 | 2682 | 97.6 | Plus |
| nuf-PJ | 541 | CG33991-PJ | 1..541 | 1..528 | 2682 | 97.6 | Plus |
| nuf-PB | 305 | CG33991-PB | 1..305 | 224..528 | 1437 | 95.7 | Plus |
