BS24177.complete Sequence
212 bp assembled on 2011-01-28
GenBank Submission: KX803889
> BS24177.complete
GAAGTTATCAGTCGACATGGACCACAGAACTCGCGTTGTGGAGGTGGTGC
AAGTGCCACCCCAACCCTCGACCACGGTGATCGTGCAACCTCCTCCGCCG
CCGCCTCCTCCCAAGGATAACAGTTGCTGTTGTTGTCCTTGCTGCCCCTG
TTGCTGTCAGTGTGGCGAATGCTGTTGCTGCTGCACCATCATGTGAAAGC
TTTCTAGACCAT
BS24177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34198-RA | 180 | CG34198-PA | 1..180 | 17..196 | 900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34198-RA | 532 | CG34198-RA | 74..261 | 12..199 | 925 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19682717..19682904 | 199..12 | 925 | 99.5 | Minus |
Blast to na_te.dros performed 2014-11-26 16:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2372..2432 | 184..124 | 170 | 75.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2658 | 184..123 | 157 | 72.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2421 | 184..123 | 156 | 73.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6838 | 184..121 | 151 | 73.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6805 | 184..121 | 149 | 70.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6860 | 184..123 | 148 | 71 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1154 | 184..123 | 148 | 71 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6823 | 184..121 | 139 | 70.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2384 | 183..121 | 137 | 71.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2444 | 184..118 | 137 | 67.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1515..1580 | 186..121 | 132 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6794 | 184..123 | 132 | 71 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1133 | 201..123 | 132 | 65.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6903 | 183..122 | 130 | 67.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6874 | 184..121 | 122 | 65.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6893 | 186..123 | 122 | 65.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6850..6913 | 184..121 | 122 | 65.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2450..2526 | 194..123 | 121 | 67.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2834 | 184..118 | 119 | 64.2 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 648..728 | 90..171 | 119 | 62.2 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 883..967 | 74..164 | 116 | 63.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 10423..10478 | 187..134 | 113 | 69.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2782..2879 | 185..92 | 112 | 62 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6538..6585 | 184..139 | 109 | 72.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2870 | 183..121 | 108 | 63.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6763 | 156..121 | 108 | 77.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2411..2472 | 184..123 | 103 | 62.9 | Minus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..8014 | 183..124 | 102 | 63.3 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9458 | 183..124 | 102 | 63.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1599 | 183..125 | 101 | 67.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2354 | 156..121 | 99 | 75 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 953..1012 | 180..122 | 99 | 65 | Minus |
BS24177.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:25 Download gff for
BS24177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34198-RA | 75..253 | 17..195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:37 Download gff for
BS24177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34198-RA | 79..257 | 17..195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:15 Download gff for
BS24177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34198-RA | 79..257 | 17..195 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:15 Download gff for
BS24177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19682721..19682899 | 17..195 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:37 Download gff for
BS24177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15570226..15570404 | 17..195 | 100 | | Minus |
BS24177.pep Sequence
Translation from 16 to 195
> BS24177.pep
MDHRTRVVEVVQVPPQPSTTVIVQPPPPPPPPKDNSCCCCPCCPCCCQCG
ECCCCCTIM*
BS24177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34198-PA | 59 | CG34198-PA | 1..59 | 1..59 | 377 | 100 | Plus |
