BS24178.complete Sequence
1331 bp assembled on 2011-02-18
GenBank Submission: KX805041
> BS24178.complete
GAAGTTATCAGTCGACATGAAGAGCTGGCTGAAGATCTCGCTGCTGCTGT
GCACGTTTGGCTTTTTCCGGGAGTTTCGACCTTCGGAGCCGTACGTCACA
GAGTACCTAGCCTCGGATTATGGCAACCTGACGACGGATCAAATCTATCA
GGATGTGTATCCCTTCGGCACGTACTCGGTGCTGGCCCAGCTGGTAATTG
TGTTCCTCATCACAGATCTGGTGAGGTACAAACCGGTTATCGTGCTATCG
GCACTGGCTGGCATTACCCTGTTCTCCATGCTTATCTGGACGGAAACCGT
GGGAATGCTGCAGGTGGCCCAAGTGTTTTTTGGCACCTTTACGGCCGCTG
AGGTGGCCTACTACACGTACATGTACGCCAAGGTCAACAAGGAGCAGTAT
CAGGTAGTCACGGGCCACACGCGAGCTGCCATCTTGAGCGGCAAGTTCCT
CGGCGGCCTGTTTGCCCAGATTTTGGTGTCCACCGATAGCATGGATTACC
GGCAGCTGCACTACCTCTCGCTGGCCACGCAGCTAATCTCCCTGGCCGTG
TCCCTGTTCCTGCCCAGTGTGCCGCGTAGCCTCTACTTCTACGCGGGTTC
CGAGAAGATTACCATTGCCGACGGAGAAGAGACCTCACCAAAGTTCTCCT
TTGCCAACGCATGCCGCCTGCTGTGGTACCACCTCGTTAGTTCCTACTCC
AATCCCGTCGTGCTGCAGTGGAGCATATGGTGGGCATTGGCCACCTGTGG
TCAAGTTCAAGTGATCTCCTACATCCAGTTCCTGTGGAAAGAGGTGGCAC
CGAATAAGCTCAGTGTTTACAATGGCGGAGTGGAGGCCGTGGCCACGCTG
CTGGGTGCTATTGGAGCCATTCTGGCGGGCCTGCTGAACTCCAATAAGCG
ACGGGGATCGTATATGATGGGCATATCCATCTGTGCCGCTGCCCTGGGCG
CTCTGCTCATCTATGCCGCCAAGACGCAGTTGATCTGGGTGGCCTACGTG
AACTATGTGCTTTTCTGCACCGTATTCTTCTTCATCATCACGGTGGCGGG
TGCCGTGGTGGCCGAGAATCTGGTGGAGGACAGTTTCGGCTTGATCTTCG
GTATCAATACGTTGGTGGGTCTGATCCTGCAGACTATTCTGACCGTTGCG
GTTGTGGAGCGAGTTGGATTCGCTCTGGAGCCGCGGGATCAGTACGTGGT
TTACGGTAGCTACTTTGTGGTCTTGGGTGGAATATCCATAATTGGGTCTA
TCTGCGTGAAACTGTTTTGCAGGACTAACAAGTCGAGTGTGGAAAATGTG
GTTTCTTTAACATAAAAGCTTTCTAGACCAT
BS24178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17036-RB | 1299 | CG17036-PB | 1..1299 | 17..1315 | 6495 | 100 | Plus |
| CG17036-RA | 1299 | CG17036-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17036-RB | 1680 | CG17036-RB | 229..1531 | 13..1315 | 6515 | 100 | Plus |
| CG17036-RA | 1663 | CG17036-RA | 127..1429 | 13..1315 | 6515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12699769..12700518 | 762..13 | 3750 | 100 | Minus |
| 2L | 23513712 | 2L | 12699152..12699706 | 1315..761 | 2775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:34:48 has no hits.
BS24178.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 16:08:48 Download gff for
BS24178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17036-RA | 233..1529 | 17..1313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:57 Download gff for
BS24178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17036-RA | 131..1427 | 17..1313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:07 Download gff for
BS24178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17036-RA | 131..1427 | 17..1313 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:07 Download gff for
BS24178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12699154..12699706 | 761..1313 | 100 | <- | Minus |
| 2L | 12699771..12700514 | 17..760 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:57 Download gff for
BS24178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12699154..12699706 | 761..1313 | 100 | <- | Minus |
| arm_2L | 12699771..12700514 | 17..760 | 100 | | Minus |
BS24178.pep Sequence
Translation from 16 to 1314
> BS24178.pep
MKSWLKISLLLCTFGFFREFRPSEPYVTEYLASDYGNLTTDQIYQDVYPF
GTYSVLAQLVIVFLITDLVRYKPVIVLSALAGITLFSMLIWTETVGMLQV
AQVFFGTFTAAEVAYYTYMYAKVNKEQYQVVTGHTRAAILSGKFLGGLFA
QILVSTDSMDYRQLHYLSLATQLISLAVSLFLPSVPRSLYFYAGSEKITI
ADGEETSPKFSFANACRLLWYHLVSSYSNPVVLQWSIWWALATCGQVQVI
SYIQFLWKEVAPNKLSVYNGGVEAVATLLGAIGAILAGLLNSNKRRGSYM
MGISICAAALGALLIYAAKTQLIWVAYVNYVLFCTVFFFIITVAGAVVAE
NLVEDSFGLIFGINTLVGLILQTILTVAVVERVGFALEPRDQYVVYGSYF
VVLGGISIIGSICVKLFCRTNKSSVENVVSLT*
BS24178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17036-PB | 432 | CG17036-PB | 1..432 | 1..432 | 2192 | 100 | Plus |
| CG17036-PA | 432 | CG17036-PA | 1..432 | 1..432 | 2192 | 100 | Plus |
| CG6574-PA | 444 | CG6574-PA | 1..434 | 1..421 | 995 | 45.2 | Plus |
| CG14694-PA | 446 | CG14694-PA | 1..429 | 1..416 | 915 | 44.1 | Plus |
