BS24180.complete Sequence
1991 bp assembled on 2011-02-18
GenBank Submission: KX806262
> BS24180.complete
GAAGTTATCAGTCGACATGGTGCAAAATCTGTGGACTGCCCTCCTTCTGC
TGGGCAGTGCCACCTGCGGTTCGAGTGTGCCGGTCAAGGCAAATGATCCG
GAACAGAGTTGTCCGTACCTCGGAGAGTGCAATTCCACTATCAATCAGCA
GCACATCGATACGCTGATGTCCTACGTGGACAGCGAAAAAAATCCCTGCG
AGGATTTCTATGCCTACGCCTGCGGAAAATGGCGGGCGAAGCATGGAAGC
CACACAACCGCCACGATGATCAGCGAATCGCAAATTAACCGCCAGTACGA
GGATTTGTTCCTACAACTGCTGAGGAATCCCAGCGCCCCGGAATATGGAT
ACCCCATGTTCGCCAAGGTGTTGGCCCATTACCAGTCATGCATCGCGCTG
GAGAAGCCGGATCTGAGGCGATACATCGAGCTACTGGACCGGGATCTGCT
CGCCTCCTTAAACTCCACACACTGGATGCACCTGCTGGCAGCTCTGGGGC
GCTACGGCTACCACGGTCACTACGTCCAAGTAGAGGTACGTTGGTACAAC
GCCACCCATCACATGATCTTCCTGCTGCCGCACAATCGCCACCTAAACCT
GAGTCTCACGCAAGACATCTATGATGCGCTGAGTCAGGATGGCTCCTCCT
GGCCACCGCTCCACCAGCTACAGGAGCAGTTCAGAAGTTTGGAGCAGAAC
TTGGTGCGACTGGCTAAGCCCCATTCGGCGGACGATACCTTCCGGAATTA
CAGTCTGGATCAGATTCGGACGGAGGTGCCGGGTCTGCATTGGGACGAGG
CGCTGAGGACACAGCTGGGCAGATCGGTGCCGGGGAATCATGTCTTCCAG
GTGGACGACTTGGACGCGATCGAGGGGCTTGTGGAGTACCTCAATACGGT
AGATACTCTGCTGCTCAATCGGTACAGCCTGGCAAGATTTCTCAGCCACC
TGCTTGAGCTGCCACATAACCCGCTGGCCACTTGGGAGTCCGGACAGCGG
TCGCGGGGAAGGAACTGTATTCGTCACATGCGCCGCTCTGTTTACCTGCC
GATGAACTACGTCTACGAGAGAAGTTTCTACTCCCGGCGCCGCCACGCGG
ATGAGCTGGTCATCCACAGCGTCTTCCAGCAGCTGCAGAGTCAGCTGGAG
CTGCGGGTCCAGCACAACGCCTTCAATCTAAGTCAGGATCTGGTGAAATC
GCTGCAGGCAAAGGTGCACCAGATGCGCATCAATGTGGGCAACCTACCGC
CCAATGTGACGGAGCAATTCTATTGGGACAGCGACCGGCGGTGGAGCGTG
GGCAGGGACTTCTACGAGAATCACCTGAACAGCCTGCTCTACTACTACAC
GCTCGTCGCCGATTTGGAAAGCAGCTCGGACCAGGAGGAGCGGGACATCT
GGTACAGCTTCAATATGCATACGCCCGAGTTTCCCGACAACATCGATGCC
ACGCCGTACTTCTACTGCCTGGGCAACATCATCTTCGTGCCGTACTCCTA
CGTAAAGCGTCCCTTCTTCGATGCCAACTTCTGGCCAGCGCTGCTCTACG
GTGATCTGGCCAACACCCTGGGCCACGAGATCATGCACGCCTTCGACACC
GATCTGGTGGACTACGATGCGCAGGGTAATCTGCGTAACTTTAGCGACCA
GTTGGGCGAAGTGGAGCTCTACAACGGAGCGGTTGGATGCCTGAACAGCA
GCGCTGTTATGCTAAACGAGCGCACCTCCGACGTCAGCGGATCCCGGCTG
GCCATGCAAACCTACGGTGGCGACTGGCTCACTCGGTCGGGCAACGGGCG
TCTGTACTTCCTCCAGTTCGCCCACTTCTTCTGCGGCGACGAGGGCGACC
AGTACCATGACTCCGGCAGCCAGCGGCTGAACTACGCCCTCGGCCAGGTG
CCGCAGTTCGCAGAGGTGTTCCGGTGCCATGTTGGCTCCGGAATGACCAG
CGCGGACCAGTGTCCCTTCTGGTGAAAGCTTTCTAGACCAT
BS24180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9505-RA | 1959 | CG9505-PA | 1..1959 | 17..1975 | 9780 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9505-RA | 2309 | CG9505-RA | 260..2218 | 17..1975 | 9780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6368141..6370099 | 17..1975 | 9780 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:25:14 has no hits.
BS24180.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:43 Download gff for
BS24180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9505-RA | 258..2215 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:33 Download gff for
BS24180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9505-RA | 260..2217 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:47 Download gff for
BS24180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9505-RA | 260..2217 | 17..1974 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:47 Download gff for
BS24180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6368141..6370098 | 17..1974 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:33 Download gff for
BS24180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6368141..6370098 | 17..1974 | 99 | | Plus |
BS24180.pep Sequence
Translation from 16 to 1974
> BS24180.pep
MVQNLWTALLLLGSATCGSSVPVKANDPEQSCPYLGECNSTINQQHIDTL
MSYVDSEKNPCEDFYAYACGKWRAKHGSHTTATMISESQINRQYEDLFLQ
LLRNPSAPEYGYPMFAKVLAHYQSCIALEKPDLRRYIELLDRDLLASLNS
THWMHLLAALGRYGYHGHYVQVEVRWYNATHHMIFLLPHNRHLNLSLTQD
IYDALSQDGSSWPPLHQLQEQFRSLEQNLVRLAKPHSADDTFRNYSLDQI
RTEVPGLHWDEALRTQLGRSVPGNHVFQVDDLDAIEGLVEYLNTVDTLLL
NRYSLARFLSHLLELPHNPLATWESGQRSRGRNCIRHMRRSVYLPMNYVY
ERSFYSRRRHADELVIHSVFQQLQSQLELRVQHNAFNLSQDLVKSLQAKV
HQMRINVGNLPPNVTEQFYWDSDRRWSVGRDFYENHLNSLLYYYTLVADL
ESSSDQEERDIWYSFNMHTPEFPDNIDATPYFYCLGNIIFVPYSYVKRPF
FDANFWPALLYGDLANTLGHEIMHAFDTDLVDYDAQGNLRNFSDQLGEVE
LYNGAVGCLNSSAVMLNERTSDVSGSRLAMQTYGGDWLTRSGNGRLYFLQ
FAHFFCGDEGDQYHDSGSQRLNYALGQVPQFAEVFRCHVGSGMTSADQCP
FW*
BS24180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9505-PA | 652 | CG9505-PA | 1..652 | 1..652 | 3526 | 100 | Plus |
| CG42370-PA | 655 | CG9508-PA | 26..655 | 43..652 | 410 | 25 | Plus |
| CG9507-PA | 684 | CG9507-PA | 31..684 | 41..652 | 371 | 22 | Plus |
| CG4580-PA | 619 | CG4580-PA | 17..608 | 43..638 | 324 | 23.9 | Plus |
| CG8550-PA | 633 | CG8550-PA | 24..619 | 42..652 | 284 | 22.5 | Plus |
