Clone BS24183 Report

Search the DGRC for BS24183

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:241
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG8519-RA
Protein status:BS24183.pep: full length peptide match
Sequenced Size:656

Clone Sequence Records

BS24183.complete Sequence

656 bp assembled on 2011-01-28

GenBank Submission: KX801040

> BS24183.complete
GAAGTTATCAGTCGACATGACCACGCGTGGAATTCGGTGCAAGAAGTCCA
CATTGACGGAGTTGAAAATCGCCGTGATCGGAGCGCCCAGTGTTGGCAAA
AGCGCCCTAATTGTGCGTTTCTTGACAAAGCGTTACATCGGGGAGTACGA
TCATCAGACTGAGAATCGCTACAAGCACGAGGCTATGGTGGATGGCGAAC
CGGTGCTCTTTGAAATACTAGACACATGTCCCAAGGCTGAAGACGAATAC
CCCAATGCAGCTGAGCTCGTTCAGTGGGCCGATGGCCTATTGCTGGTCTA
CTCGATAACAGATCGCAAGAGTTTCAACTATATACGCCGTGCCAAATCCG
ATCTTCAGTCCGATACACCCGTCCAACTTTGTGCCAACAAAGTGGATATG
GTGCACCTGCGCCAGGTGAGCCGCGACGAGGGCGAAATCCTGGCCAAGGA
CTTTGAGTGCAAGTTCAGCGAGGTCTCCGCCGCCGACCACGTCGACCAGG
TGGCCGAGGTTTTCAACGAGCTGTGCAAAGAGGTGCTGGCCTCCAAGCGC
AAGTCCAAGCAGAGTCTGCTGGAAAGGATGCTCGGTGGAGCACGACCCTA
CAGCCGAGGGAAGAGCGACAGCAATTTGCCAAAAGACTGAAAGCTTTCTA
GACCAT

BS24183.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8519-RA 624 CG8519-PA 1..624 17..640 3120 100 Plus
CG8519-RB 456 CG8519-PB 1..456 185..640 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8519-RA 1303 CG8519-RA 624..1251 17..644 3125 99.8 Plus
CG8519-RB 709 CG8519-RB 117..657 104..644 2690 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6708538..6708948 234..644 2040 99.8 Plus
3L 28110227 3L 6708348..6708480 104..236 665 100 Plus
3L 28110227 3L 6705483..6705570 17..104 440 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:48:44 has no hits.

BS24183.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:24 Download gff for BS24183.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 618..1240 17..639 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:20 Download gff for BS24183.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 624..1246 17..639 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:58 Download gff for BS24183.complete
Subject Subject Range Query Range Percent Splice Strand
CG8519-RA 624..1246 17..639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:58 Download gff for BS24183.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6708349..6708479 105..235 100 -> Plus
3L 6708540..6708943 236..639 100   Plus
3L 6705483..6705570 17..104 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:20 Download gff for BS24183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6698583..6698670 17..104 100 -> Plus
arm_3L 6701449..6701579 105..235 100 -> Plus
arm_3L 6701640..6702043 236..639 100   Plus

BS24183.pep Sequence

Translation from 16 to 639

> BS24183.pep
MTTRGIRCKKSTLTELKIAVIGAPSVGKSALIVRFLTKRYIGEYDHQTEN
RYKHEAMVDGEPVLFEILDTCPKAEDEYPNAAELVQWADGLLLVYSITDR
KSFNYIRRAKSDLQSDTPVQLCANKVDMVHLRQVSRDEGEILAKDFECKF
SEVSAADHVDQVAEVFNELCKEVLASKRKSKQSLLERMLGGARPYSRGKS
DSNLPKD*

BS24183.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8519-PA 207 CG8519-PA 1..207 1..207 1061 100 Plus
CG8519-PB 151 CG8519-PB 1..151 57..207 775 100 Plus
CG5160-PB 328 CG5160-PB 23..194 16..169 264 36.6 Plus
CG5160-PA 328 CG5160-PA 23..194 16..169 264 36.6 Plus
Rap2l-PA 182 CG3204-PA 1..175 13..183 237 34.4 Plus