BS24183.complete Sequence
656 bp assembled on 2011-01-28
GenBank Submission: KX801040
> BS24183.complete
GAAGTTATCAGTCGACATGACCACGCGTGGAATTCGGTGCAAGAAGTCCA
CATTGACGGAGTTGAAAATCGCCGTGATCGGAGCGCCCAGTGTTGGCAAA
AGCGCCCTAATTGTGCGTTTCTTGACAAAGCGTTACATCGGGGAGTACGA
TCATCAGACTGAGAATCGCTACAAGCACGAGGCTATGGTGGATGGCGAAC
CGGTGCTCTTTGAAATACTAGACACATGTCCCAAGGCTGAAGACGAATAC
CCCAATGCAGCTGAGCTCGTTCAGTGGGCCGATGGCCTATTGCTGGTCTA
CTCGATAACAGATCGCAAGAGTTTCAACTATATACGCCGTGCCAAATCCG
ATCTTCAGTCCGATACACCCGTCCAACTTTGTGCCAACAAAGTGGATATG
GTGCACCTGCGCCAGGTGAGCCGCGACGAGGGCGAAATCCTGGCCAAGGA
CTTTGAGTGCAAGTTCAGCGAGGTCTCCGCCGCCGACCACGTCGACCAGG
TGGCCGAGGTTTTCAACGAGCTGTGCAAAGAGGTGCTGGCCTCCAAGCGC
AAGTCCAAGCAGAGTCTGCTGGAAAGGATGCTCGGTGGAGCACGACCCTA
CAGCCGAGGGAAGAGCGACAGCAATTTGCCAAAAGACTGAAAGCTTTCTA
GACCAT
BS24183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8519-RA | 624 | CG8519-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
CG8519-RB | 456 | CG8519-PB | 1..456 | 185..640 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8519-RA | 1303 | CG8519-RA | 624..1251 | 17..644 | 3125 | 99.8 | Plus |
CG8519-RB | 709 | CG8519-RB | 117..657 | 104..644 | 2690 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6708538..6708948 | 234..644 | 2040 | 99.8 | Plus |
3L | 28110227 | 3L | 6708348..6708480 | 104..236 | 665 | 100 | Plus |
3L | 28110227 | 3L | 6705483..6705570 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:48:44 has no hits.
BS24183.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:24 Download gff for
BS24183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8519-RA | 618..1240 | 17..639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:20 Download gff for
BS24183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8519-RA | 624..1246 | 17..639 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:58 Download gff for
BS24183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8519-RA | 624..1246 | 17..639 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:58 Download gff for
BS24183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6708349..6708479 | 105..235 | 100 | -> | Plus |
3L | 6708540..6708943 | 236..639 | 100 | | Plus |
3L | 6705483..6705570 | 17..104 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:20 Download gff for
BS24183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6698583..6698670 | 17..104 | 100 | -> | Plus |
arm_3L | 6701449..6701579 | 105..235 | 100 | -> | Plus |
arm_3L | 6701640..6702043 | 236..639 | 100 | | Plus |
BS24183.pep Sequence
Translation from 16 to 639
> BS24183.pep
MTTRGIRCKKSTLTELKIAVIGAPSVGKSALIVRFLTKRYIGEYDHQTEN
RYKHEAMVDGEPVLFEILDTCPKAEDEYPNAAELVQWADGLLLVYSITDR
KSFNYIRRAKSDLQSDTPVQLCANKVDMVHLRQVSRDEGEILAKDFECKF
SEVSAADHVDQVAEVFNELCKEVLASKRKSKQSLLERMLGGARPYSRGKS
DSNLPKD*
BS24183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8519-PA | 207 | CG8519-PA | 1..207 | 1..207 | 1061 | 100 | Plus |
CG8519-PB | 151 | CG8519-PB | 1..151 | 57..207 | 775 | 100 | Plus |
CG5160-PB | 328 | CG5160-PB | 23..194 | 16..169 | 264 | 36.6 | Plus |
CG5160-PA | 328 | CG5160-PA | 23..194 | 16..169 | 264 | 36.6 | Plus |
Rap2l-PA | 182 | CG3204-PA | 1..175 | 13..183 | 237 | 34.4 | Plus |