BS24186.complete Sequence
704 bp assembled on 2011-01-28
GenBank Submission: KX801881
> BS24186.complete
GAAGTTATCAGTCGACATGGCATCCGCTACGGTAAGAAATGTGCCGCTGC
TCGACGATGACACGATACCCTTTGGCGAGGAGGACGAGATGCGGGATCCC
AGTCGCGCGGGTCAGAAATACACGCACCCGTACGTCACCTTCTTCCACCT
GTTCTTCAGGGGCGCCGCCATCCTGATCTATATGTTCTGCGGTTGGTTCA
GCGACTCCTTCATCACCAGCTTCGTTTTCGTGGTGCTCTTCCTGTCCGCC
GACTTCTGGACGGTGAAGAACATCTCGGGCAGATTGCTGGTCGGTCTCCG
CTGGTGGAACTACGTCGACGACGATGGCGTATCGCACTGGGTGTTTGAGT
CAAAGAACTCTGAATCCTACCAGAGTCGGGTCAACAAGAACGAGCAGCGC
ATCTTCTGGCTGGGACTCATCCTCTGTCCCGTCTTCTGGGGCCTCTTCTT
CCTGTTCGCCCTATTCGGCCTGAAGTTCAAATGGCTACTGCTGGTAATGA
TCGCCATTGCGCTGAATGCCGCCAATCTGTATGGCTACGTCAAGTGTAAC
TATGGTGCCAATAAGGATCTGAATTCCGCCGCCACAGACTTTGTGAAAAC
GCAGTTCTTCAAGAATGCTGTGGACATCATGACAAGGCCCAGTGGCGCCC
CACCGCCAACAAATGTACGCCCGACGGGAGTCGTTTGAAAGCTTTCTAGA
CCAT
BS24186.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5021-RC | 672 | CG5021-PC | 1..672 | 17..688 | 3345 | 99.9 | Plus |
| CG5021-RD | 663 | CG5021-PD | 16..663 | 41..688 | 3225 | 99.8 | Plus |
| CG5021-RA | 657 | CG5021-PA | 1..657 | 17..688 | 3085 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5021-RC | 1088 | CG5021-RC | 140..812 | 16..688 | 3350 | 99.9 | Plus |
| CG5021-RD | 1022 | CG5021-RD | 156..803 | 41..688 | 3225 | 99.8 | Plus |
| CG5021-RA | 933 | CG5021-RA | 140..797 | 16..688 | 3090 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8967566..8967895 | 359..688 | 1635 | 99.7 | Plus |
| 3L | 28110227 | 3L | 8967278..8967516 | 120..358 | 1180 | 99.6 | Plus |
| 3L | 28110227 | 3L | 8967128..8967211 | 41..124 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:35:50 has no hits.
BS24186.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:04 Download gff for
BS24186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5021-RC | 130..800 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:52 Download gff for
BS24186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5021-RC | 141..811 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:52 Download gff for
BS24186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5021-RC | 141..811 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:52 Download gff for
BS24186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8966969..8966992 | 17..40 | 100 | -> | Plus |
| 3L | 8967128..8967210 | 41..123 | 100 | -> | Plus |
| 3L | 8967282..8967516 | 124..358 | 100 | -> | Plus |
| 3L | 8967566..8967894 | 359..687 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:52 Download gff for
BS24186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8960069..8960092 | 17..40 | 100 | -> | Plus |
| arm_3L | 8960228..8960310 | 41..123 | 100 | -> | Plus |
| arm_3L | 8960382..8960616 | 124..358 | 100 | -> | Plus |
| arm_3L | 8960666..8960994 | 359..687 | 99 | | Plus |
BS24186.pep Sequence
Translation from 16 to 687
> BS24186.pep
MASATVRNVPLLDDDTIPFGEEDEMRDPSRAGQKYTHPYVTFFHLFFRGA
AILIYMFCGWFSDSFITSFVFVVLFLSADFWTVKNISGRLLVGLRWWNYV
DDDGVSHWVFESKNSESYQSRVNKNEQRIFWLGLILCPVFWGLFFLFALF
GLKFKWLLLVMIAIALNAANLYGYVKCNYGANKDLNSAATDFVKTQFFKN
AVDIMTRPSGAPPPTNVRPTGVV*
BS24186.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5021-PC | 223 | CG5021-PC | 1..223 | 1..223 | 1201 | 100 | Plus |
| CG5021-PD | 220 | CG5021-PD | 1..220 | 1..223 | 1172 | 98.7 | Plus |
| CG5021-PA | 218 | CG5021-PA | 1..218 | 1..223 | 1160 | 97.8 | Plus |
| CG5021-PB | 215 | CG5021-PB | 1..215 | 1..223 | 1131 | 96.4 | Plus |
