BS24188.complete Sequence
1946 bp assembled on 2011-02-18
GenBank Submission: KX802749
> BS24188.complete
GAAGTTATCAGTCGACATGGGCTGCGTCTTTGAAGCGGCCAAAGAGCAGC
CCCACAAACCGAGAAGCAGGCAACTGAGGCGCAACCAATGCCGTGGAAAA
GCGGAAAAAGCAGCAGCGGGGACCAGAGGCAAGGTCGCTGTCAGAGGAAA
CAACGACAAGCCAGCTGAGGACATCAAAATCAAGGATAACTATCAACAAA
ACCATAAAACGCAAACCGAAACACAAACAGAAGTAGCAGCAGTAGTAGCA
ATAGCAACAGACGCAGGAGCAGAAACAGAAACTGAAACAGAGGCTGAGGC
CCAAAAAGAGCCAGCAACCGGGCCCGAACATCTGAAGGCGGCGGCTCAAG
TGCTTTTAACGATACGGCAGGCACGTCAGGAGAACAACAAGCACAGTAGT
AGTCAAGTGGCTGAAACGCACAAGGACGAAGGCGAGGACGCGTTGGCGCG
GCAAGGATCCATTGTCGATACGGCGGCGGGCAGAATCGGAATCGATATTG
CGGCAACAACGATTCAAGTCGCCGAGCGGCATGAGGATGGGCAGCATTGG
CAGCAACACAATGTCCGCCGGCGGAGGCGCCAGCCAGATCCTGCAGCGCA
TCCTGCAAGCATCACCAAACTTTCGGCAATATCCCTGCATTTTCACGCCC
TCGCCGCCCTAGCGAAAACGCTCCAAAAGCACGAGGACCTGAGTCCTGTC
CAGGATCGCCAGCCCCTAGCGTACCGGGCGTGGCAAGAACATCCGTATGC
CGAGACCCAAATGCCCGCCACCATGTCAGCGGCCATCATTGCGAATGTCG
GCGCTACTGCAGCGGCCACCTCGGCAGCCGCCTTCCAGTATCTCGGCCAG
CACTACAAGCACTACAGCCAGTCGATCAGCTTCTACGCCGCCTCCAGTGT
GCTCCTGATGCTTTGTTATCTGACCACCGCGTCCACGGCAGCTGCCACGC
AGTCGGAGACGGGTGCCCTCGACAAGCATCCCATTCATGGCATCGATTGG
TCGAAATTTGATGAGTCCAGTTCGGATAAGGAAATATTAGATTTACTGCT
TGAGAAGAAGCGCTACGATAAACGATTACTGCCGCCTGTAAATGATGAAG
ACTTTTGCTGTGGCTTGCAATCGCCCGATATGGCAACTAATCAAAATGCA
CGGAGACCACACAATCGCGGCACTCTGACGGTGAACGTGAACGTGCTGCT
CCTGAGCTTAGCATCGCCCGACGAAAGCAGTTTGAAATACGAGGTTGAAT
TTCTGCTGAACCAGCAATGGAACGATCCGCGACTGCAATATGGCAATAAG
TCTCATTATGACTTCTTAAATGCTCTGCATCATCATGATAGCATCTGGAC
GCCGGATACGTATTTCATTATGCATGGCGATTTCAAGGATCCCATCATAC
CAATGCATTTCGCTTTAAGAATATTTCGGAACGGGACCATTACGTACGCA
ATGAGACGTCACCTGATCTTATCCTGCCAGGGAAGTCTTCATATATTTCC
ATTCGATGACCCCAAGTGTTCCTTCTCCATGGAGAGCATTTCCTACGAGG
AGGCCCAAATCAAGTACGTCTGGAAAAACGATGAGGACACTCTGCGGAAG
AGTCCTTCGCTGACCACATTGAACGCGTACTTAATCAAGAATCAAACGAC
GGCCTGCGATCAGAACAGCTGGAGAGGTAAGTCATTGGGATCGCAATTGC
CAGTAATCGAATGCCAATCACTTCATTTGCTTATACTTTGTATTAGCCAA
AGAAATTACAACCGGGAAATGTTTTGCTCTTTAGTAATCGTAGTGTTTTT
GATGGTAAACTGGTATTTACTTTGTACAACATACAAAAACGGCAAATTCC
ATACAATTATTTTAGGTTTTTTCGTGCAAAACGGACCTTCTCAGTTTAGT
ACTCCATTCTTTGGCTTGGCTTTAAAATAAAAGCTTTCTAGACCAT
BS24188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pHCl-RC | 1914 | CG44099-PC | 1..1914 | 17..1930 | 9570 | 100 | Plus |
| pHCl-RN | 2937 | CG44099-PN | 1..1664 | 17..1680 | 8320 | 100 | Plus |
| pHCl-RH | 2289 | CG44099-PH | 1..1664 | 17..1680 | 8320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pHCl-RC | 3361 | CG44099-RC | 517..2432 | 15..1930 | 9580 | 100 | Plus |
| pHCl-RN | 6629 | CG44099-RN | 517..2182 | 15..1680 | 8330 | 100 | Plus |
| pHCl-RH | 3247 | CG44099-RH | 522..2187 | 15..1680 | 8330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15869830..15870799 | 984..15 | 4850 | 100 | Minus |
| 3L | 28110227 | 3L | 15864348..15864739 | 1930..1539 | 1960 | 100 | Minus |
| 3L | 28110227 | 3L | 15867266..15867487 | 1455..1234 | 1110 | 100 | Minus |
| 3L | 28110227 | 3L | 15868559..15868647 | 1094..1006 | 445 | 100 | Minus |
| 3L | 28110227 | 3L | 15865758..15865842 | 1538..1454 | 425 | 100 | Minus |
| 3L | 28110227 | 3L | 15867982..15868058 | 1170..1094 | 385 | 100 | Minus |
| 3L | 28110227 | 3L | 15867555..15867620 | 1234..1169 | 330 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8046..8084 | 228..266 | 114 | 76.9 | Plus |
BS24188.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:46 Download gff for
BS24188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pHCl-RC | 519..2430 | 17..1928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:28 Download gff for
BS24188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pHCl-RC | 519..2430 | 17..1928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:52 Download gff for
BS24188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pHCl-RC | 519..2430 | 17..1928 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:52 Download gff for
BS24188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15867983..15868057 | 1095..1169 | 100 | <- | Minus |
| 3L | 15868559..15868647 | 1006..1094 | 100 | <- | Minus |
| 3L | 15869248..15869268 | 985..1005 | 100 | <- | Minus |
| 3L | 15864350..15864739 | 1539..1928 | 100 | <- | Minus |
| 3L | 15865758..15865840 | 1456..1538 | 100 | <- | Minus |
| 3L | 15867266..15867486 | 1235..1455 | 100 | <- | Minus |
| 3L | 15867555..15867619 | 1170..1234 | 100 | <- | Minus |
| 3L | 15869830..15870797 | 17..984 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:28 Download gff for
BS24188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15857450..15857839 | 1539..1928 | 100 | <- | Minus |
| arm_3L | 15858858..15858940 | 1456..1538 | 100 | <- | Minus |
| arm_3L | 15860366..15860586 | 1235..1455 | 100 | <- | Minus |
| arm_3L | 15860655..15860719 | 1170..1234 | 100 | <- | Minus |
| arm_3L | 15861083..15861157 | 1095..1169 | 100 | <- | Minus |
| arm_3L | 15861659..15861747 | 1006..1094 | 100 | <- | Minus |
| arm_3L | 15862348..15862368 | 985..1005 | 100 | <- | Minus |
| arm_3L | 15862930..15863897 | 17..984 | 100 | | Minus |
BS24188.pep Sequence
Translation from 16 to 1929
> BS24188.pep
MGCVFEAAKEQPHKPRSRQLRRNQCRGKAEKAAAGTRGKVAVRGNNDKPA
EDIKIKDNYQQNHKTQTETQTEVAAVVAIATDAGAETETETEAEAQKEPA
TGPEHLKAAAQVLLTIRQARQENNKHSSSQVAETHKDEGEDALARQGSIV
DTAAGRIGIDIAATTIQVAERHEDGQHWQQHNVRRRRRQPDPAAHPASIT
KLSAISLHFHALAALAKTLQKHEDLSPVQDRQPLAYRAWQEHPYAETQMP
ATMSAAIIANVGATAAATSAAAFQYLGQHYKHYSQSISFYAASSVLLMLC
YLTTASTAAATQSETGALDKHPIHGIDWSKFDESSSDKEILDLLLEKKRY
DKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRGTLTVNVNVLLLSLAS
PDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLNALHHHDSIWTPDTYF
IMHGDFKDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPK
CSFSMESISYEEAQIKYVWKNDEDTLRKSPSLTTLNAYLIKNQTTACDQN
SWRGKSLGSQLPVIECQSLHLLILCISQRNYNREMFCSLVIVVFLMVNWY
LLCTTYKNGKFHTIILGFFVQNGPSQFSTPFFGLALK*
BS24188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pHCl-PC | 637 | CG44099-PC | 1..637 | 1..637 | 3344 | 100 | Plus |
| pHCl-PN | 978 | CG44099-PN | 1..554 | 1..554 | 2904 | 100 | Plus |
| pHCl-PG | 681 | CG44099-PG | 1..554 | 1..554 | 2904 | 100 | Plus |
| pHCl-PF | 779 | CG44099-PF | 1..554 | 1..554 | 2904 | 100 | Plus |
| pHCl-PE | 762 | CG44099-PE | 1..554 | 1..554 | 2904 | 100 | Plus |
