BS24195.complete Sequence
485 bp assembled on 2011-01-28
GenBank Submission: KX806138
> BS24195.complete
GAAGTTATCAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACA
AGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAG
GAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGA
GAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGG
AGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTA
GACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGGCATGGT
GCGCACCGAGGTGCGCTGCTCCCGATGCTCCGCCCATATGGGCCACGTCT
TCGATGATGGACCGCCGCCCAAGCATCGACGCTTCTGCATCAATTCCGCG
TCCATCGATTTCGTGAAGAGTGCGACGCCATCGAAGGCGGATCCATCGAC
GGCCTCGTCCAAGAAATAAAAGCTTTCTAGACCAT
BS24195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RJ | 579 | CG6584-PJ | 127..579 | 17..469 | 2265 | 100 | Plus |
| SelR-RH | 453 | CG6584-PH | 1..453 | 17..469 | 2265 | 100 | Plus |
| SelR-RG | 474 | CG6584-PG | 1..474 | 17..469 | 2020 | 95.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RJ | 2392 | CG6584-RJ | 376..828 | 17..469 | 2265 | 100 | Plus |
| SelR-RH | 2277 | CG6584-RH | 261..713 | 17..469 | 2265 | 100 | Plus |
| SelR-RG | 2298 | CG6584-RG | 261..734 | 17..469 | 2020 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10865451..10865628 | 469..292 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 10866528..10866698 | 294..124 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 10866807..10866920 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:49:50 has no hits.
BS24195.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:26 Download gff for
BS24195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RH | 276..719 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:48 Download gff for
BS24195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RH | 261..704 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:23 Download gff for
BS24195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RH | 261..704 | 17..460 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:23 Download gff for
BS24195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10865460..10865626 | 294..460 | 100 | <- | Minus |
| 3R | 10866529..10866693 | 129..293 | 100 | <- | Minus |
| 3R | 10866809..10866920 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:48 Download gff for
BS24195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6692251..6692415 | 129..293 | 100 | <- | Minus |
| arm_3R | 6691182..6691348 | 294..460 | 100 | <- | Minus |
| arm_3R | 6692531..6692642 | 17..128 | 100 | | Minus |
BS24195.pep Sequence
Translation from 16 to 468
> BS24195.pep
MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ
CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVR
CSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKK
*
BS24195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-PH | 150 | CG6584-PH | 1..150 | 1..150 | 817 | 100 | Plus |
| SelR-PJ | 192 | CG6584-PJ | 43..192 | 1..150 | 817 | 100 | Plus |
| SelR-PG | 157 | CG6584-PG | 1..157 | 1..150 | 799 | 95.5 | Plus |
| SelR-PI | 155 | CG6584-PI | 1..141 | 1..147 | 689 | 85.7 | Plus |
| SelR-PA | 155 | CG6584-PA | 1..141 | 1..147 | 689 | 85.7 | Plus |
