BS24201.complete Sequence
773 bp assembled on 2011-01-28
GenBank Submission: KX804352
> BS24201.complete
GAAGTTATCAGTCGACATGTCTGGTAAATACGATCTGCTCAGTGAGCAGG
GCCTCCGTCTGGACGGACGACGTCCTCATGAATTGCGCCGCATCAAGTGC
AAACTGGGAGTCTTCGAGCAGCCCGATGGAAGTGCCTACATGGAGCAGGG
AAACACCAAGGTTCTGGCTGCCGTCTATGGACCCCACCAGGCCAAGGGCA
ATCAGACAGAGTCCGTCATCAACTGTCAGTACAGTCAGGCAACCTTCTCC
ACGGCGGAGCGCAAAAATAGGCCGCGCGGCGATCGCAAATCTCTGGAGTT
CAAGTTGTACCTGCAGCAGGCGCTAAGTGCTGCCATTAAATCAGAACTAT
ATCCCCGCTCCCAGATAGACATATACGTGGAGGTGCTCCAAGACGACGGC
GCCAACTATGCGGTGGCTCTTAATGCCGCCACACTGGCGCTAATTGATGC
GGGAATCTGCCTCAATGAGTTCATTGTCGCCTGCACCGCCTCACTGAGCA
AATCGAACATCCCGCTCACAGACATCTCTCAGTTCGAGGAGGTATCCGGC
GGACCGAAGCTAACCGTGGCTGCCTTGCCTACCGCCGAGAAAATCGCCTT
TCTTGAGATGAGTGAGCGGTTCCACATCGATCACTTGGAAACCGTCATCG
AGACTGCTATGGCGGGTTGCCGCGAAATAAGGGACATTCTGGAGGCAGCA
GTCAAGGAGCACCTTCTGCACATGGGCAGTGCCTCTGACTTTGCGAAAGT
TGGTTGAAAGCTTTCTAGACCAT
BS24201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ski6-RB | 741 | CG15481-PB | 1..741 | 17..757 | 3690 | 99.9 | Plus |
| Ski6-RA | 741 | CG15481-PA | 1..741 | 17..757 | 3690 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ski6-RB | 903 | CG15481-RB | 79..821 | 17..759 | 3700 | 99.9 | Plus |
| Ski6-RA | 911 | CG15481-RA | 87..829 | 17..759 | 3700 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13221479..13222221 | 759..17 | 3700 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:53:06 has no hits.
BS24201.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:32 Download gff for
BS24201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ski6-RA | 95..834 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:14 Download gff for
BS24201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ski6-RA | 87..826 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:44 Download gff for
BS24201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ski6-RA | 87..826 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:44 Download gff for
BS24201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13221482..13222221 | 17..756 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:14 Download gff for
BS24201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13221482..13222221 | 17..756 | 99 | | Minus |
BS24201.pep Sequence
Translation from 16 to 756
> BS24201.pep
MSGKYDLLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVL
AAVYGPHQAKGNQTESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQ
QALSAAIKSELYPRSQIDIYVEVLQDDGANYAVALNAATLALIDAGICLN
EFIVACTASLSKSNIPLTDISQFEEVSGGPKLTVAALPTAEKIAFLEMSE
RFHIDHLETVIETAMAGCREIRDILEAAVKEHLLHMGSASDFAKVG*
BS24201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ski6-PB | 246 | CG15481-PB | 1..246 | 1..246 | 1244 | 100 | Plus |
| Ski6-PA | 246 | CG15481-PA | 1..246 | 1..246 | 1244 | 100 | Plus |
| Mtr3-PA | 326 | CG8025-PA | 33..201 | 11..176 | 191 | 31.4 | Plus |
| Rrp46-PA | 233 | CG4043-PA | 13..206 | 22..221 | 150 | 23.8 | Plus |
