BS24204.complete Sequence
494 bp assembled on 2011-01-28
GenBank Submission: KX802686
> BS24204.complete
GAAGTTATCAGTCGACATGGCCGATGGAGAATACGACAAGGAACAATTGA
GAATCCTTAGGAACGCCTTCAAGGCTTTCGACCACGACGGTGCAGGATCG
ATCGAACATGCTGATGTATCTAGCATTCTTGAAATTTTGGGTCAGAAATT
AGAACCACCTGCGGTAAAGGCCCTTATTAAAGAGGTCGATAAAGGAACAA
CTGGTAAATTGGATTTTAGCCAGTTCTGCAAACTGGCAGCTCGCTTTATT
GAAGTTGAGGAAGATGTGGGAGCTCTTCAAAATGAGTTAAAAGAGGCCTT
CCGTGTATATGATAAAGAGGGGAAAGGATACCTGACAGTTGCAACACTAA
GAGGCATTCTTCACGAATTGGACGATAAGCTTTCTAACCAAGACTTAGAT
ATGATTATAGAAGAAATTGATGCGGATGGATCCGGTACGGTTGATTTTGA
CGAATTCATGCAAGTTATGACAGGTTGAAAGCTTTCTAGACCAT
BS24204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC4-RB | 462 | CG12408-PB | 1..462 | 17..478 | 2310 | 100 | Plus |
| TpnC4-RA | 462 | CG12408-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
| TpnC41C-RB | 465 | CG2981-PB | 379..453 | 401..475 | 195 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC4-RB | 746 | CG12408-RB | 78..539 | 17..478 | 2310 | 100 | Plus |
| TpnC4-RA | 849 | CG12408-RA | 181..642 | 17..478 | 2310 | 100 | Plus |
| TpnC41C-RB | 1880 | CG2981-RB | 602..676 | 401..475 | 195 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5506313..5506711 | 452..54 | 1995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:50:38 has no hits.
BS24204.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:27 Download gff for
BS24204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC4-RA | 181..641 | 17..477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:08 Download gff for
BS24204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC4-RA | 181..641 | 17..477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:42 Download gff for
BS24204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC4-RA | 181..641 | 17..477 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:42 Download gff for
BS24204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5506234..5506258 | 453..477 | 92 | <- | Minus |
| 2R | 5506313..5506711 | 54..452 | 100 | <- | Minus |
| 2R | 5506761..5506796 | 17..53 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:08 Download gff for
BS24204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1393739..1393763 | 453..477 | 92 | <- | Minus |
| arm_2R | 1393818..1394216 | 54..452 | 100 | <- | Minus |
| arm_2R | 1394266..1394301 | 17..53 | 97 | | Minus |
BS24204.pep Sequence
Translation from 16 to 477
> BS24204.pep
MADGEYDKEQLRILRNAFKAFDHDGAGSIEHADVSSILEILGQKLEPPAV
KALIKEVDKGTTGKLDFSQFCKLAARFIEVEEDVGALQNELKEAFRVYDK
EGKGYLTVATLRGILHELDDKLSNQDLDMIIEEIDADGSGTVDFDEFMQV
MTG*
BS24204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC4-PB | 153 | CG12408-PB | 1..153 | 1..153 | 775 | 100 | Plus |
| TpnC4-PA | 153 | CG12408-PA | 1..153 | 1..153 | 775 | 100 | Plus |
| TpnC41C-PB | 154 | CG2981-PB | 4..151 | 5..153 | 436 | 59.7 | Plus |
| TpnC41C-PA | 154 | CG2981-PA | 4..151 | 5..153 | 436 | 59.7 | Plus |
| TpnC73F-PC | 155 | CG7930-PC | 5..154 | 3..153 | 411 | 52.3 | Plus |
