BS24217.complete Sequence
1016 bp assembled on 2011-01-28
GenBank Submission: KX802546
> BS24217.complete
GAAGTTATCAGTCGACATGTCCAACTACTACAGTCTACTACTACAAGCGG
ACACCTACGACGACGAGTCGATAGGCGACGAGCGTAGCGAAGAAGACACG
GACGACGCCAGCGAGACGGAGTTCCGCAGCCCCAGCCGCTACGGCGCCAT
GAATGGGACCTCCAACAGCAACAACATGGGCACCAACAGCGAACTGAAGG
AGCAAATGTACCAGCACAAGCTGTTCAACCTGCAGAAGCAGATGGAGGAA
CTGGGCCAGCTGGTGCATCCGGAGTACTTGAAGCGCGTGAAGAAGCTGGA
CAGCCAGCTAAAGGAGCGCCGACGCATGAACGAGGTCTACAAGGAGTACA
TGCGCGAGTGCGTCGAACGGGACTATGTGCTGGAGAAGATGGCCGCCCAG
AAGGAGTACGACGAAAAGATGATGGACCTCAAAGACAACCTGATCTCGGA
CTTCGAGGACCGCAAGCGTCAGATCGAGAACGAGCGCTTCAGCATCGAGC
TGACCAACGATTCCATGGAGATCAAGACGACGATCACGCGCAAGCTGCGT
CGTCGCCCCAACGAACCGCTTCCGGTGATCGAGAAGCGCCGCAAGCCGGC
CACCGGCCAGCTGCTCGTCTACCAGCTGGATGATAAGGAAATCGAGTCGG
ACCTAAAGATCATCCAGCGTGGCAGACCGAATCCAGTTCCCCAGCAGAAC
GGCAGCGGCTCCTACGGCAGTGGCTCCCAGCAGCAGCAATCGATGCACGT
TCTGGCCGAGCCGACCTCCAATAGCGGCCTGGTGGAGACTCGCATCGAGG
ACAACAAGCTGCTGTACGAGCGGCGATGGTTCTGCCGCGGCCAGCAGGTC
TATGTCGAGGGCAAGGAGATGAGCAAGTTCGCGGCCACCATTACGGCCAT
TGGCAACGAGGTGGTTTGGGTGAAGCGCACCAACGAGACCAAGGTTAAGA
TCAACATGTCCCATCTGGCCAAGGGCAAGATCTCGATAAAGCGCCGATAG
AAGCTTTCTAGACCAT
BS24217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14220-RB | 984 | CG14220-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
| CG14220-RA | 984 | CG14220-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14220-RB | 1817 | CG14220-RB | 161..1145 | 16..1000 | 4925 | 100 | Plus |
| CG14220-RA | 1312 | CG14220-RA | 161..1145 | 16..1000 | 4925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19600634..19601344 | 915..205 | 3555 | 100 | Minus |
| X | 23542271 | X | 19601404..19601514 | 204..94 | 555 | 100 | Minus |
| X | 23542271 | X | 19600475..19600562 | 1000..913 | 440 | 100 | Minus |
| X | 23542271 | X | 19601612..19601691 | 95..16 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..7095 | 124..503 | 189 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1489..1633 | 90..238 | 186 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6865 | 162..307 | 178 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6913 | 124..262 | 163 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2485 | 109..261 | 159 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6874 | 124..253 | 152 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2459 | 96..223 | 151 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 138..251 | 134 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2672 | 127..199 | 119 | 64.4 | Plus |
BS24217.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:28 Download gff for
BS24217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14220-RA | 161..1144 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:20 Download gff for
BS24217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14220-RA | 161..1144 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:53 Download gff for
BS24217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14220-RA | 162..1145 | 17..1000 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:53 Download gff for
BS24217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19600475..19600561 | 914..1000 | 100 | <- | Minus |
| X | 19600636..19601344 | 205..913 | 100 | <- | Minus |
| X | 19601404..19601512 | 96..204 | 100 | <- | Minus |
| X | 19601612..19601690 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:20 Download gff for
BS24217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19494508..19494594 | 914..1000 | 100 | <- | Minus |
| arm_X | 19494669..19495377 | 205..913 | 100 | <- | Minus |
| arm_X | 19495437..19495545 | 96..204 | 100 | <- | Minus |
| arm_X | 19495645..19495723 | 17..95 | 100 | | Minus |
BS24217.pep Sequence
Translation from 16 to 999
> BS24217.pep
MSNYYSLLLQADTYDDESIGDERSEEDTDDASETEFRSPSRYGAMNGTSN
SNNMGTNSELKEQMYQHKLFNLQKQMEELGQLVHPEYLKRVKKLDSQLKE
RRRMNEVYKEYMRECVERDYVLEKMAAQKEYDEKMMDLKDNLISDFEDRK
RQIENERFSIELTNDSMEIKTTITRKLRRRPNEPLPVIEKRRKPATGQLL
VYQLDDKEIESDLKIIQRGRPNPVPQQNGSGSYGSGSQQQQSMHVLAEPT
SNSGLVETRIEDNKLLYERRWFCRGQQVYVEGKEMSKFAATITAIGNEVV
WVKRTNETKVKINMSHLAKGKISIKRR*
BS24217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14220-PB | 327 | CG14220-PB | 1..327 | 1..327 | 1681 | 100 | Plus |
| CG14220-PA | 327 | CG14220-PA | 1..327 | 1..327 | 1681 | 100 | Plus |
| Brms1-PA | 259 | CG4400-PA | 29..259 | 12..254 | 176 | 24.3 | Plus |
