BS24218.complete Sequence
1382 bp assembled on 2011-01-28
GenBank Submission: KX801939
> BS24218.complete
GAAGTTATCAGTCGACATGAGGGAATGCATTTCGGTTCACATTGGCCAAG
CTGGTGTCCAGATCGGCAATGCCTGCTGGGAACTTTACTGCCTGGAGCAC
GGCATCCAGCCCGATGGCCATATGCCCTCCGATAAAACCGTGGGCGGAGG
CGATGACTCCTTCAGCACCTTCTTCAGCGAGACTGGAGCTGGTAAGCATG
TGCCGCGTGCCGTGTTCGTGGATCTGGAGCCCACTGTGGTGGATGAGGTG
CGGACAGGAACCTACCGCCAGCTGTTCCATCCGGAGCAACTGATCACCGG
TAAGGAGGATGCGGCCAACAACTATGCCCGCGGCCACTATACCATCGGTA
AGGAGATCGTCGACGTGGTCCTGGACAGGATTCGCAAGTTGGCGGATCAG
TGCACGGGTCTGCAGGGATTCCTGGTCTTCCACTCCTTCGGCGGCGGCAC
TGGCTCTGGATTTACGTCGCTGCTGATGGAGCGCCTGTCCGTGGACTATG
GAAAGAAGTCAAAGCTGGAGTTCTCCATTTACCCAGCACCACAAGTGTCC
ACAGCTGTGGTCGAGCCATACAACTCGATCTTAACCACCCACACAACGCT
GGAGCACTCGGACTGTGCGTTTATGGTTGACAACGAGGCAATCTACGACA
TCTGCCGGCGCAACTTGGATATCGAGCGACCCACCTACATGAATCTCAAT
CGCCTAATTGGCCAGATCGTTTCCTCCATTACGGCCTCGTTGCGCTTCGA
TGGCGCCCTGAATGTGGATCTGACCGAGTTCCAGACCAATTTGGTGCCCT
ACCCACGCATTCATTTCCCACTGGCGACATACGCTCCCGTCATTTCCGTG
GAGAAGGCCTACCATGAGCAACTGACCGTGGCCGAGATCACCAATGCCTG
CTTCGAGCCGGCCAACCAGATGGTCAAGTGTGATCCGCGTCGTGGCAAGT
ACATGGCCTGCTGCATGCTCTACCGCGGTGATGTGGTGCCCAAGGATGTG
AACGCAGCCATTGCCACCATCAAGACCAAGCGCTCTATCCAGTTCGTCGA
CTGGTGTCCCACGGGCTTCAAGGTGGGCATCAACTATCAGCCACCCACCG
TTGTTCCTGGCGGAGATCTGGCCAAGGTGCAGCGCGCCGTCTGCATGCTG
TCCAATACCACTGCCATTGCCGAGGCCTGGGCCCGTCTGGATCACAAGTT
CGATCTGATGTACGCCAAGAGGGCCTTCGTCCACTGGTACGTGGGTGAGG
GCATGGAGGAGGGCGAGTTCGCCGAGGCTCGCGAGGATCTCGCTGCCCTC
GAGAAGGACTACGAGGAGGTAGGCATCGACTCCACCACCGAACTGGGGGA
AGATGAGGAATACTAGAAGCTTTCTAGACCAT
BS24218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub85E-RA | 1350 | CG9476-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| alphaTub84B-RA | 1353 | CG1913-PA | 26..1317 | 42..1333 | 4030 | 87.5 | Plus |
| alphaTub84D-RA | 1353 | CG2512-PA | 28..1317 | 44..1333 | 3975 | 87.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub85E-RA | 1560 | CG9476-RA | 102..1453 | 16..1367 | 6760 | 100 | Plus |
| alphaTub84B-RA | 1752 | CG1913-RA | 169..1460 | 42..1333 | 4030 | 87.5 | Plus |
| alphaTub84D-RA | 1980 | CG2512-RA | 534..1823 | 44..1333 | 3975 | 87.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9731328..9732150 | 1367..545 | 4115 | 100 | Minus |
| 3R | 32079331 | 3R | 7087256..7088547 | 42..1333 | 4030 | 87.5 | Plus |
| 3R | 32079331 | 3R | 7531286..7532575 | 44..1333 | 3975 | 87.2 | Plus |
| 3R | 32079331 | 3R | 9732277..9732804 | 546..19 | 2640 | 100 | Minus |
| 3L | 28110227 | 3L | 9682194..9683236 | 278..1320 | 1030 | 73.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:51:18 has no hits.
BS24218.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:28 Download gff for
BS24218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub85E-RA | 118..1467 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:28 Download gff for
BS24218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub85E-RA | 103..1452 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:59 Download gff for
BS24218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub85E-RA | 103..1452 | 17..1366 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:59 Download gff for
BS24218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9731329..9732150 | 545..1366 | 100 | <- | Minus |
| 3R | 9732279..9732805 | 17..544 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:28 Download gff for
BS24218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5557051..5557872 | 545..1366 | 100 | <- | Minus |
| arm_3R | 5558001..5558527 | 17..544 | 99 | | Minus |
BS24218.pep Sequence
Translation from 16 to 1365
> BS24218.pep
MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGHMPSDKTVGGGDDSFS
TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAA
NNYARGHYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFT
SLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYMNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLATYAPVISVEKAYHEQLTVAEITNACFEPAN
QMVKCDPRRGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFAEAREDLAALEKDYEEVGIDSTTELGEDEEY*
BS24218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub85E-PA | 449 | CG9476-PA | 1..449 | 1..449 | 2381 | 100 | Plus |
| alphaTub84B-PA | 450 | CG1913-PA | 1..450 | 1..449 | 2283 | 95.3 | Plus |
| alphaTub84D-PA | 450 | CG2512-PA | 1..450 | 1..449 | 2272 | 94.9 | Plus |
| alphaTub67C-PA | 462 | CG8308-PA | 1..458 | 1..447 | 1726 | 67.7 | Plus |
| CG7794-PA | 455 | CG7794-PA | 6..442 | 3..441 | 1264 | 52.8 | Plus |
