BS24219.complete Sequence
860 bp assembled on 2011-01-28
GenBank Submission: KX801869
> BS24219.complete
GAAGTTATCAGTCGACATGTTGCAAAACAACGCGGTGCGCACTTTGCAAT
ACGACAGTGAGATCCGTGTGGCCCAGCAGCCAAGTCTCTCAGAACCGAGA
GTTTATGACTCCCATATCAGCATTACCTCACAACCCAGGCCGGAGGCTCC
ACGCATCCCGCTGCCAGTGCCAATTGCCACGGTTACGGGAAGCCGGACGC
TTATCCCACTTTCCGGATACGATTGCCTAGCAGATCTGCCGTCCGTACAT
ATTGAACAGACCTTTGAGCTTAACGATGCCCTAACAGGCGTCTCCTCGGA
GAATCGATATGTGGTGCGATCTCCACTGGGTGATGCCATTTTCGCGGCCA
ACGAGAGTTCCACAGAAAAAAATCGACTACTTTGGGGAGCTGGTCGACCC
TTTCAGATGCACCTGCTGGATAAAACGCACCAGGAAGCTCTGGTTTTTCG
CAAAAAACTAGCGATGGGATCCATGTGCTGCCAGGCAAAAAGTCTAGAAA
TTTGGATACCACCTGGTAATTTGCTGGGTAAAGTGGTGCAGTCGCCCACC
TTCATGCAGCCGGAGTTCTTTATCGAAGACGAAAGCACAGGACAACTAAC
ATTCTGTGTAGAGGGTCCTGTCGGTTTAGGATTCTGCTGCTTCAGTTTGC
CCAAAGATTGTTATTTTAAGATCCATTCGGGAGGCAATATGAGGGCTTCC
ATAGACCACAAATGGCTCGCAAGCAAGTCTCAGTACACCACAAATATATA
CTTTAGTGACGCCAAGCTAACCGCCAAGGAGCGGGCTTTGATACTGGGAT
CAGCCTTTCTACTGGAATATCTATTCTTCCAAACCCGCTTTTGAAAGCTT
TCTAGACCAT
BS24219.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9084-RB | 828 | CG9084-PB | 1..828 | 17..844 | 4125 | 99.9 | Plus |
| CG9084-RC | 846 | CG9084-PC | 1..846 | 17..844 | 3910 | 97.8 | Plus |
| CG9084-RE | 438 | CG9084-PE | 1..438 | 407..844 | 2175 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9084-RB | 937 | CG9084-RB | 71..902 | 13..844 | 4130 | 99.8 | Plus |
| CG9084-RC | 955 | CG9084-RC | 71..920 | 13..844 | 3915 | 97.6 | Plus |
| CG9084-RE | 1253 | CG9084-RE | 476..1218 | 102..844 | 3700 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11217754..11218146 | 670..278 | 1965 | 100 | Minus |
| 2R | 25286936 | 2R | 11218206..11218384 | 278..100 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 11217546..11217692 | 815..669 | 720 | 99.3 | Minus |
| 2R | 25286936 | 2R | 11219083..11219171 | 101..13 | 430 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:51:37 has no hits.
BS24219.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:29 Download gff for
BS24219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9084-RB | 52..873 | 22..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:36 Download gff for
BS24219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9084-RB | 80..901 | 22..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:07 Download gff for
BS24219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9084-RB | 80..901 | 22..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:07 Download gff for
BS24219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11218206..11218382 | 102..278 | 100 | <- | Minus |
| 2R | 11219083..11219162 | 22..101 | 100 | | Minus |
| 2R | 11217452..11217480 | 815..843 | 100 | <- | Minus |
| 2R | 11217547..11217690 | 671..814 | 99 | <- | Minus |
| 2R | 11217754..11218145 | 279..670 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:36 Download gff for
BS24219.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7105711..7105887 | 102..278 | 100 | <- | Minus |
| arm_2R | 7105052..7105195 | 671..814 | 99 | <- | Minus |
| arm_2R | 7106588..7106667 | 22..101 | 100 | | Minus |
| arm_2R | 7104957..7104985 | 815..843 | 100 | <- | Minus |
| arm_2R | 7105259..7105650 | 279..670 | 100 | <- | Minus |
BS24219.pep Sequence
Translation from 16 to 843
> BS24219.pep
MLQNNAVRTLQYDSEIRVAQQPSLSEPRVYDSHISITSQPRPEAPRIPLP
VPIATVTGSRTLIPLSGYDCLADLPSVHIEQTFELNDALTGVSSENRYVV
RSPLGDAIFAANESSTEKNRLLWGAGRPFQMHLLDKTHQEALVFRKKLAM
GSMCCQAKSLEIWIPPGNLLGKVVQSPTFMQPEFFIEDESTGQLTFCVEG
PVGLGFCCFSLPKDCYFKIHSGGNMRASIDHKWLASKSQYTTNIYFSDAK
LTAKERALILGSAFLLEYLFFQTRF*
BS24219.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9084-PB | 275 | CG9084-PB | 1..275 | 1..275 | 1440 | 100 | Plus |
| CG9084-PC | 281 | CG9084-PC | 1..281 | 1..275 | 1423 | 97.9 | Plus |
| CG9084-PE | 145 | CG9084-PE | 1..145 | 131..275 | 775 | 100 | Plus |
| CG9084-PD | 145 | CG9084-PD | 1..145 | 131..275 | 775 | 100 | Plus |
| scramb1-PB | 233 | CG32056-PB | 13..220 | 67..272 | 236 | 29.1 | Plus |
