Clone BS24223 Report

Search the DGRC for BS24223

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:242
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG31030-RA
Protein status:BS24223.pep: gold
Sequenced Size:1187

Clone Sequence Records

BS24223.complete Sequence

1187 bp assembled on 2011-01-28

GenBank Submission: KX805479

> BS24223.complete
GAAGTTATCAGTCGACATGCAGCTGATTCTCGTGGCGACCTTGCTGTGCC
TGATAATCGGCAGCTGCAGTGCATCCATAAGTGGGCCGTTCATCTTCTGG
GGTCACTCCAGGGTATCCAGTCAGCAAACCCAGGCCTTGGTGGAATCGAG
CAGCAGGGAGCTACCGCTGACGCAACTTTTCACAGAGGCCAAGGCAATTG
TGGTCTTCGTACGCAACACTACCAACCGACTGGAGGGCACCAGGTATCCC
AAGTTCCAGAATCTCGTTAAGAGCGGAGCCTGGACCTATCTGCCACAGAG
GAGTCTGGCGGCTGAACCCTTCGGCTTGAATGCCAACATTGAAGTGGTGA
GTCTCTCGGGACACGGAGAAGAGGATGACTCTGAGATTCTGTTGGCCTAC
AACGAAGCCGTGAATACCTACGGTCGCGGTGAAGTGCTGGGCATCTTGGG
CAGCCGTGAGGAGGAGGCCCACTTCCTGGCCAAGAGGGAGGCTGCTCCAG
GGGGTGAGGAGGAGGAGAAAGCAAAGGCTGCTGAAGGTTCCGAGGAGACT
GAGGCCAGTTTCATCTACGTGGCCGAGGGCAACAAAGCGGTGCTTAGTCT
CAACGGACCCCTGGAGCTCCGGGTGACCAATGACACTCTGAAGCTGGAGG
AGCACATCAAGCAGATTACCTTCGATGATCAGCGGGCCAAGGGATACGGT
CGATTGAGCATCACTTTCATGCATTCAGGGGAAAAGTGCACGCTGCGTTT
TAAATTCTCCCTCATTCGGGGATCCTGGACGTTGCGCAATGTGGAGGTGG
AGTACCGGGAGCTGAAGAGTGTCCTGGTAGCACGTGGTGATGAGTACACA
CTGCCCTCCGCACCGCTGGGATTCTCGTACCGCTGCTCAGCGGAAAGCGT
TAACTTCCTGAATCCCGCCCGGAATGAGACAATCCAGAGTCTCCTCCTCA
GTGATTTCCAGGTGCAGCCGTGGCTCAACGGACGACCGGAATATGGTGAG
GTGTACGACTGCATAGGATTCGTGTCGGCACCCATCCTGGCCGGACTGTT
CGTCGTGACCCTGCTCCTTGGCATCCTGGGACTCGGCATATCCGCCATGC
TCAGCATGCACACGCCCAACCGATTCGAGAGTTCGCGCAGCAAGCAGTTG
ACCTTCACCGTACAGGAGTAAAAGCTTTCTAGACCAT

BS24223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31030-RA 1155 CG31030-PA 1..1155 17..1171 5760 99.9 Plus
CG31030-RB 1272 CG31030-PB 1..1130 17..1146 5635 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31030-RA 1671 CG31030-RA 59..1213 17..1171 5760 99.9 Plus
CG31030-RB 1616 CG31030-RB 59..1188 17..1146 5635 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30165150..30165977 1171..344 4140 100 Minus
3R 32079331 3R 30166032..30166361 346..17 1635 99.7 Minus
Blast to na_te.dros performed on 2014-11-26 16:50:51 has no hits.

BS24223.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:27 Download gff for BS24223.complete
Subject Subject Range Query Range Percent Splice Strand
CG31030-RA 70..1222 17..1169 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:15 Download gff for BS24223.complete
Subject Subject Range Query Range Percent Splice Strand
CG31030-RA 59..1211 17..1169 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:46 Download gff for BS24223.complete
Subject Subject Range Query Range Percent Splice Strand
CG31030-RA 59..1211 17..1169 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:46 Download gff for BS24223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30165152..30165977 344..1169 100 <- Minus
3R 30166035..30166361 17..343 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:15 Download gff for BS24223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25991757..25992083 17..343 99   Minus
arm_3R 25990874..25991699 344..1169 100 <- Minus

BS24223.pep Sequence

Translation from 16 to 1170

> BS24223.pep
MQLILVATLLCLIIGSCSASISGPFIFWGHSRVSSQQTQALVESSSRELP
LTQLFTEAKAIVVFVRNTTNRLEGTRYPKFQNLVKSGAWTYLPQRSLAAE
PFGLNANIEVVSLSGHGEEDDSEILLAYNEAVNTYGRGEVLGILGSREEE
AHFLAKREAAPGGEEEEKAKAAEGSEETEASFIYVAEGNKAVLSLNGPLE
LRVTNDTLKLEEHIKQITFDDQRAKGYGRLSITFMHSGEKCTLRFKFSLI
RGSWTLRNVEVEYRELKSVLVARGDEYTLPSAPLGFSYRCSAESVNFLNP
ARNETIQSLLLSDFQVQPWLNGRPEYGEVYDCIGFVSAPILAGLFVVTLL
LGILGLGISAMLSMHTPNRFESSRSKQLTFTVQE*

BS24223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31030-PA 384 CG31030-PA 1..384 1..384 1948 100 Plus
CG31030-PB 423 CG31030-PB 1..377 1..377 1914 100 Plus
VhaAC45-PA 379 CG8029-PA 273..373 281..379 153 35 Plus
VhaAC45-PB 379 CG8029-PB 273..373 281..379 153 35 Plus