BS24254.complete Sequence
3188 bp assembled on 2013-10-14
GenBank Submission: KX805769
> BS24254.complete
GAAGTTATCAGTCGACATGCGACTCTTTGCCAGCAGTGGCCAGGCTGCAA
CATCGCCAGCACTGGCCCACAGTTCCAGCGATGAGGCTGGCGAGGTCATT
GAGAATTCCCATACCAAGAGAGCAGGATGCTCCGTGCTGCAGAGCAGTGG
TGGAAAGTCAAGGTCGCTGGAGCGTTACTCGGGAGCACCCAAGATACACC
AGCAGACGTTGGAGATGCTGCCGCCCTATGCCACGCCCACGTGCAGCACC
CGTCGCCGACTCCTCGCCCCCTTTCGATCGCTGAAGCGTCGCAGTCGGAG
CAGCAGCAGCAGCAATGAGTCGCACCACTTTGGCAACCATCTCAACAACC
TGGTGGTGGTCAATGTAGGGGCGGCCGCTGCAAATGGAGGTGTGGCCAAG
GCCAAGGCGAAGGCCAGCTCCCAAAGCGGTGACAGTGGAACCGGTGGCAC
CGAATTGGAGCATGAAATGGAACAGGATGACGACGAGGAGGATGAGGAGG
AGGGCGAGGAGATGGACGAACTGAGCCTGAGTTACTCGCAGTTGAGCAGC
AGTGGCTGCGAGGAAGCCGAAGCTCCACCAGAAGATGTTCCTGATGATCG
ACAAGCAGCTGTGGAGGCAACAGTCTCTGCCTGCGTGCAACACGTTGCCA
ATGAGCGGCGACGCAACATCCTGTCGCTGTACTCGTCCTCGTCGGAGGAG
CAGCTCCACTGCCGCCTGGGCGACATTACGCTGGTGGACGATACCTACTC
CAACTACGATCCGCAAAACGATGCCGAGCGCATGTTCCTCCAGGTTGTCG
GAATCTTACGCGATGAGAATGAGAAAATGCGTCAGTTCCAGAAGATCCTG
GAGGATCTTAGCTCCCGCGTTGCCCTTGCCGAGCAGACAAAAACCTCCTG
GCTGCCACCCTCATCCGTGGGCGAGGCCAATGAGCAGATGCAACAGTTGC
AGCGCCTGAGGGACAAGATGACGACGGCCAGTGCATTGCTGGATGATTGC
AACGAGCAGCAGTCCTTCTTCACCGCCAATCAGGTCCTGGTACCCACACC
CTGCCTCTCCAAGCTGGAGGACTTAAACACGCGCATGAAACTCCTGCAAA
TCGCGATGGACGAGCGCCAGAAGGTCCTTTGTCAGGCTGGAGCCCAGCAG
ACGCACGAGAACGGCGACGACGGACGCACCACATCGAACAGCGGCACCAT
TGGACCACTGCCCAATCTCGGCCAGAGCGTGAAGCCGCCATGGGAGCGGG
CCACCACAGCCGCCAATGTGCCTTACTATATCGACCACGAACGCGAGACC
ACGCACTGGGACCATCCGGAGATGATTGAGCTGATGAAGGGCCTGGCAGA
TCTCAACGAGATACGCTTTTCCGCCTACAGAACGGCCATGAAACTGCGAT
CAGTTCAGAAGCGATTGGCTCTCGACAGGATTAGCATGTCCACCGCCTGC
GAGTCCTTCGATCGACATGGCCTGCGTGCCCAAAACGACAAGCTGATCGA
CATACCCGACATGACCACGGTGCTGCATTCGCTCTACGTGACAATCGATA
AAATTGATTTGACGCTAATGCTGGACCTGGCCATTAACTGGATCCTGAAT
GTCTACGACTCACAGAGGACCGGCCAAATCCGTGTCCTCAGCTTCAAGGT
CGGACTGGTCCTCCTCTGCAAGGGTCACCTGGAGGAGAAGTATCGCTATC
TGTTCCGCCTGGTTGCAGACACTGACCGACGAGCGGATCAGAGGCGACTG
GGACTCCTGCTGCACGATTGCATTCAGGTACCCCGCCAACTAGGTGAAGT
AGCCGCTTTTGGTGGCTCCAACATAGAGCCCTCGGTGAGATCCTGTCTGG
AGCAGGCTGGCATCTCGCAGGAGGCCATCGATGGCAACCAGGACATCTCC
ATCGAGCTGCAGCACTTCCTCGGCTGGCTGCAGCATGAACCGCAGAGCCT
CGTGTGGCTTCCGGTGCTCCATCGCCTGGCGGCGGCGGAGGCGGCCAAGC
ACCAGGCCAAATGCAACATCTGCAAGGAGTACCCGATCGTCGGCTTCCGC
TACAGATGCCTCAAGTGCTTCAACTTCGACATGTGCCAAAAGTGTTTCTT
CTTCGGCCGCAACGCCAAGAACCACAAGCTAACTCATCCCATGCACGAGT
ACTGCACCACTACCACATCCACCGAGGACGTTCGTGACTTTACACGCGCC
CTGAAGAACAAATTCAAGAGTCGCAAATACTTTAAAAAGCATCCAAGAGT
GGGATACCTGCCCGTTCAGAGTGTTTTGGAAGGTGATGCTCTGGAGAGTC
CGGCGCCAAGTCCGCAGCACACAACCCACCAGCTGCAGAACGACATGCAC
TCCCGCCTGGAGATGTACGCCTCGCGACTGGCTCAGGTGGAGTACGGCGG
AACGGGCTCGAATTCCACGCCGGACAGTGATGATGAGCACCAACTGATCG
CTCAGTATTGCCAGGCTCTGCCCGGAACTTCAAATGGAAGTGCACCCAAG
TCGCCTGTCCAAGTAATGGCCGCCATGGATGCCGAGCAGCGGGAAGAACT
AGAGGCGATCATCCGCGATCTTGAGGAGGAAAACGCCAACCTGCAGGCAG
AGTACCAGCAATTGTGCAGCAAGGAGCAGAGCGGCATGCCCGAGGACTCC
AATGGCATGCAACACTCCAGTTCCAGCATGACGGGTCTTTCTGGCCAGGG
CGAGCAAGGCCAGGACATGATGGCGGAAGCGAAGCTGCTGCGCCAGCACA
AGGGACGCCTTGAGGCGCGCATGCAAATCCTGGAGGATCACAATCGGCAA
CTGGAAGCTCAGTTGCAGCGACTACGCCAACTTCTCGATGAACCCAATGG
CGGCGGCAGTAGCGCCACCAGCAGCGGTCTACCCAGCGCTCCCGGTTCCG
CATTGAACTCCAAACCCAATACCCTCCAGACCCGGTCGGTGACCGCCTCG
CAATTGAACACGGACTCACCGGCAAAGATGAACCAACAGAACGGCCACTA
CGAGCACAACTCAAAGAACTCAAGTGGCCTAGTGACCGTAATCACAGAGC
AGGAATTGGAGAGCATCAACGATGATCTGGAGGACTCGTCGAGCAGCAAC
ACTACGAACACCACGACGACGACGACGACCACGGCAACCACGGAGAAAAC
TTGCGTGGAGCTGCAAAAATAAAAGCTTTCTAGACCAT
BS24254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dys-RE | 3156 | CG34157-PE | 1..3156 | 17..3172 | 15780 | 100 | Plus |
| Dys-RJ | 3459 | CG34157-PJ | 1..3000 | 17..3016 | 15000 | 100 | Plus |
| Dys-RG | 10515 | CG34157-PG | 8166..10515 | 823..3172 | 11750 | 100 | Plus |
| Dys-RJ | 3459 | CG34157-PJ | 3302..3459 | 3015..3172 | 790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dys-RE | 4821 | CG34157-RE | 931..4086 | 17..3172 | 15780 | 100 | Plus |
| Dys-RJ | 4723 | CG34157-RJ | 530..3529 | 17..3016 | 15000 | 100 | Plus |
| Dys-RG | 11374 | CG34157-RG | 8290..10639 | 823..3172 | 11750 | 100 | Plus |
| Dys-RJ | 4723 | CG34157-RJ | 3831..3988 | 3015..3172 | 790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19585708..19586514 | 17..823 | 4035 | 100 | Plus |
| 3R | 32079331 | 3R | 19592328..19592761 | 2281..2714 | 2170 | 100 | Plus |
| 3R | 32079331 | 3R | 19591656..19592041 | 1776..2161 | 1930 | 100 | Plus |
| 3R | 32079331 | 3R | 19590957..19591318 | 1418..1779 | 1810 | 100 | Plus |
| 3R | 32079331 | 3R | 19592820..19593123 | 2711..3014 | 1520 | 100 | Plus |
| 3R | 32079331 | 3R | 19590122..19590383 | 822..1083 | 1310 | 100 | Plus |
| 3R | 32079331 | 3R | 19590444..19590645 | 1083..1284 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 19594500..19594657 | 3015..3172 | 790 | 100 | Plus |
| 3R | 32079331 | 3R | 19590759..19590892 | 1285..1418 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 19592109..19592231 | 2162..2284 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:07:49 has no hits.
BS24254.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:16:00 Download gff for
BS24254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dys-RE | 931..4078 | 17..3164 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:49 Download gff for
BS24254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dys-RE | 931..4078 | 17..3164 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:49 Download gff for
BS24254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19590124..19590383 | 824..1083 | 100 | -> | Plus |
| 3R | 19590445..19590645 | 1084..1284 | 100 | -> | Plus |
| 3R | 19590759..19590892 | 1285..1418 | 100 | -> | Plus |
| 3R | 19590958..19591316 | 1419..1777 | 100 | -> | Plus |
| 3R | 19585708..19586514 | 17..823 | 100 | -> | Plus |
| 3R | 19591658..19592041 | 1778..2161 | 100 | -> | Plus |
| 3R | 19592109..19592229 | 2162..2282 | 100 | -> | Plus |
| 3R | 19592330..19592760 | 2283..2713 | 100 | -> | Plus |
| 3R | 19592823..19593123 | 2714..3014 | 100 | -> | Plus |
| 3R | 19594500..19594649 | 3015..3164 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:16:00 Download gff for
BS24254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15411430..15412236 | 17..823 | 100 | -> | Plus |
| arm_3R | 15415846..15416105 | 824..1083 | 100 | -> | Plus |
| arm_3R | 15416167..15416367 | 1084..1284 | 100 | -> | Plus |
| arm_3R | 15416481..15416614 | 1285..1418 | 100 | -> | Plus |
| arm_3R | 15416680..15417038 | 1419..1777 | 100 | -> | Plus |
| arm_3R | 15417380..15417763 | 1778..2161 | 100 | -> | Plus |
| arm_3R | 15417831..15417951 | 2162..2282 | 100 | -> | Plus |
| arm_3R | 15418052..15418482 | 2283..2713 | 100 | -> | Plus |
| arm_3R | 15418545..15418845 | 2714..3014 | 100 | -> | Plus |
| arm_3R | 15420222..15420371 | 3015..3164 | 100 | | Plus |
BS24254.pep Sequence
Translation from 16 to 3171
> BS24254.pep
MRLFASSGQAATSPALAHSSSDEAGEVIENSHTKRAGCSVLQSSGGKSRS
LERYSGAPKIHQQTLEMLPPYATPTCSTRRRLLAPFRSLKRRSRSSSSSN
ESHHFGNHLNNLVVVNVGAAAANGGVAKAKAKASSQSGDSGTGGTELEHE
MEQDDDEEDEEEGEEMDELSLSYSQLSSSGCEEAEAPPEDVPDDRQAAVE
ATVSACVQHVANERRRNILSLYSSSSEEQLHCRLGDITLVDDTYSNYDPQ
NDAERMFLQVVGILRDENEKMRQFQKILEDLSSRVALAEQTKTSWLPPSS
VGEANEQMQQLQRLRDKMTTASALLDDCNEQQSFFTANQVLVPTPCLSKL
EDLNTRMKLLQIAMDERQKVLCQAGAQQTHENGDDGRTTSNSGTIGPLPN
LGQSVKPPWERATTAANVPYYIDHERETTHWDHPEMIELMKGLADLNEIR
FSAYRTAMKLRSVQKRLALDRISMSTACESFDRHGLRAQNDKLIDIPDMT
TVLHSLYVTIDKIDLTLMLDLAINWILNVYDSQRTGQIRVLSFKVGLVLL
CKGHLEEKYRYLFRLVADTDRRADQRRLGLLLHDCIQVPRQLGEVAAFGG
SNIEPSVRSCLEQAGISQEAIDGNQDISIELQHFLGWLQHEPQSLVWLPV
LHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQKCFFFGRNA
KNHKLTHPMHEYCTTTTSTEDVRDFTRALKNKFKSRKYFKKHPRVGYLPV
QSVLEGDALESPAPSPQHTTHQLQNDMHSRLEMYASRLAQVEYGGTGSNS
TPDSDDEHQLIAQYCQALPGTSNGSAPKSPVQVMAAMDAEQREELEAIIR
DLEEENANLQAEYQQLCSKEQSGMPEDSNGMQHSSSSMTGLSGQGEQGQD
MMAEAKLLRQHKGRLEARMQILEDHNRQLEAQLQRLRQLLDEPNGGGSSA
TSSGLPSAPGSALNSKPNTLQTRSVTASQLNTDSPAKMNQQNGHYEHNSK
NSSGLVTVITEQELESINDDLEDSSSSNTTNTTTTTTTTATTEKTCVELQ
K*
BS24254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dys-PE | 1051 | CG34157-PE | 1..1051 | 1..1051 | 5430 | 100 | Plus |
| Dys-PJ | 1152 | CG34157-PJ | 1..1000 | 1..1000 | 5180 | 100 | Plus |
| Dys-PL | 1323 | CG34157-PL | 441..1323 | 193..1051 | 4069 | 90.5 | Plus |
| Dys-PK | 3144 | CG34157-PK | 2262..3144 | 193..1051 | 4069 | 90.5 | Plus |
| Dys-PG | 3504 | CG34157-PG | 2639..3504 | 193..1051 | 4068 | 91.3 | Plus |
